RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PASKQ96RG2 1323 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 SNED1Q8TER0 1413 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 HTTP42858 3142 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 FMNL1O95466 1100 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 TIAM2Q8IVF5 1701 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 KIF13BQ9NQT8 1826 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 GPAA1O43292 621 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 PRR29P0C7W0 189 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 SNAP25P60880 206 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 MTMR2Q13614 643 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 CPXCR1Q8N123 301 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 TANGO6Q9C0B7 1094 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 SEPT2Q15019 361 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 HOMER2Q9NSB8 354 aa9.33□□□□□ -0.92
LIMCH1-219ENST00000514096 M0R2C6 588 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 ARID4AP29374 1257 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 MAP2K1Q02750 393 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 HHIPL2Q6UWX4 724 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 CCDC82Q8N4S0 544 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 FAM151AQ8WW52 585 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 CCDC102AQ96A19 550 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 NUP88Q99567 741 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 CABP5Q9NP86 173 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 FLT1P17948 1338 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 ZNF609O15014 1411 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 RBAK-RBAKDNI3L0D1 243 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 GLRX3O76003 335 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 CERKLQ49MI3 558 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 RASAL3Q86YV0 1011 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 ANKRD13CQ8N6S4 541 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 TCEANC2Q96MN5 208 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 OSBPL5Q9H0X9 879 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 IGF2BP3O00425 579 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 GJA5P36382 358 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 NMIQ13287 307 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 TTF1Q15361 905 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 LRRC47Q8N1G4 583 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 ACER1Q8TDN7 264 aa9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 LARP6Q9BRS8 491 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-219ENST00000514096 LTBP1Q14766 1721 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 IRS2Q9Y4H2 1338 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 RHBDL3P58872 404 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 ANO1Q5XXA6 986 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 CD99L2Q8TCZ2 262 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 ARHGAP39Q9C0H5 1083 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 RNF186Q9NXI6 227 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 CTDP1Q9Y5B0 961 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 CACNA1FO60840 1977 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 CNTNAP1P78357 1384 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 A0A0D9SFI3 127 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 GOLGA6L3A6NEY3 463 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 RRP1BQ14684 758 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 SPRYD7Q5W111 196 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 RASGRP2Q7LDG7 609 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 VAT1LQ9HCJ6 419 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 ANO2Q9NQ90 1003 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 SERPINB13Q9UIV8 391 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 LOC102724159A0A0B4J2E5 919 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 NMT2O60551 498 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 JAG1P78504 1218 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 CRHR2Q13324 411 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 PWP2Q15269 919 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 TEPSINQ96N21 525 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 LRRC2Q9BYS8 371 aa9.31□□□□□ -0.92
LIMCH1-219ENST00000514096 RNF113AO15541 343 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 TAL1P17542 331 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 ATP5JP18859 108 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 CLCN1P35523 988 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 ZNF444Q8N0Y2 327 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 ZNF296Q8WUU4 475 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 MAP7D2Q96T17 732 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 TMX1Q9H3N1 280 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 PI4KBQ9UBF8 816 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 GPR75-ASB3A0A0A6YYF3 556 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 TSPY2A6NKD2 308 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 SEMA3EO15041 775 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 ZNF589Q86UQ0 364 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 WNK4Q96J92 1243 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 CPVLQ9H3G5 476 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 MYH13Q9UKX3 1938 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 MSNP26038 577 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 ABCB5Q2M3G0 1257 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 KBTBD3Q8NAB2 608 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 HAUS7Q99871 368 aa9.3□□□□□ -0.92
LIMCH1-219ENST00000514096 RASSF10A6NK89 507 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 ESPNB1AK53 854 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 PDHXO00330 501 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 PDE4AP27815 886 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 ADD2P35612 726 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 CTCFP49711 727 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 C15orf52Q6ZUT6 534 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 CCDC144CPQ8IYA2 1237 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 BRI3BPQ8WY22 251 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 DCP1AQ9NPI6 582 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 CLIP2Q9UDT6 1046 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 BTBD19C9JJ37 291 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 AKR1B1P15121 316 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 PLCG2P16885 1265 aa9.29□□□□□ -0.92
LIMCH1-219ENST00000514096 TREML2Q5T2D2 321 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms