RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SPATA32Q96LK8 384 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 RNF26Q9BY78 433 aaPredicted RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 GDPD2Q9HCC8 539 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 MYO3BQ8WXR4 1341 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 ADAMTSL1Q8N6G6 1762 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 FER1L6Q2WGJ9 1857 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 G3V3G9 751 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 SMIM22K7EJ46 135 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 PRPF3O43395 683 aaKnown RBP9.73□□□□□ -0.85
RNF4-220ENST00000513578 DTNBO60941 627 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 DEXIO95424 95 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 CYP2D6P10635 497 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 CHRNA5P30532 468 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 KIF23Q02241 960 aaPredicted RBP9.73□□□□□ -0.85
RNF4-220ENST00000513578 DACT2Q5SW24 774 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 CCDC183Q5T5S1 534 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 DCAF8Q5TAQ9 597 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 RCSD1Q6JBY9 416 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 LRSAM1Q6UWE0 723 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 OLFM4Q6UX06 510 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 TRIM22Q8IYM9 498 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 RTKN2Q8IZC4 609 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 PSMD1Q99460 953 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 ZKSCAN3Q9BRR0 538 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 ALG1Q9BT22 464 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 RTEL1Q9NZ71 1219 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 FLT1P17948 1338 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 PLIN4Q96Q06 1357 aa9.73□□□□□ -0.85
RNF4-220ENST00000513578 TSPY2A6NKD2 308 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 YEATS4O95619 227 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 POLR3DP05423 398 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 U2AF2P26368 475 aaKnown RBP eCLIP9.72□□□□□ -0.856e-8■□□□□ 9.9
RNF4-220ENST00000513578 NASPP49321 788 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 TGFB2P61812 414 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 FUT2Q10981 343 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 R3HDM1Q15032 1099 aaKnown RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 DOK7Q18PE1 504 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 FOXD4L6Q3SYB3 417 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 CCDC93Q567U6 631 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 SOGA3Q5TF21 947 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 KRT40Q6A162 431 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 FAM173BQ6P4H8 233 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 FOXD4L3Q6VB84 417 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 GAS2L3Q86XJ1 694 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 MAPKAPK5Q8IW41 473 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 ZNF444Q8N0Y2 327 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 FAM177A1Q8N128 213 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 TTLL6Q8N841 843 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 NEDD1Q8NHV4 660 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 TEKT1Q969V4 418 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 ZDHHC15Q96MV8 337 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 GRPEL1Q9HAV7 217 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 POLR3EQ9NVU0 708 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 RBM27Q9P2N5 1060 aaKnown RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 TTF2Q9UNY4 1162 aaKnown RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 SIPA1L1O43166 1804 aa9.72□□□□□ -0.85
RNF4-220ENST00000513578 COL2A1P02458 1487 aaPredicted RBP9.72□□□□□ -0.85
RNF4-220ENST00000513578 USP17L3A6NCW0 530 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 USP17L4A6NCW7 530 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 ECE2O60344 883 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 PRDM1O75626 825 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 WDHD1O75717 1129 aaPredicted RBP9.71□□□□□ -0.86
RNF4-220ENST00000513578 XRCC6P12956 609 aaKnown RBP eCLIP9.71□□□□□ -0.86
RNF4-220ENST00000513578 RXRAP19793 462 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 RASA1P20936 1047 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 KCNA3P22001 575 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 SMARCA1P28370 1054 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 CDK8P49336 464 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 PLCD1P51178 756 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 TFAP4Q01664 338 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 GABPAQ06546 454 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 TRIM29Q14134 588 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 MYSM1Q5VVJ2 828 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 TMTC3Q6ZXV5 915 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 USP17L1Q7RTZ2 530 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 RAB11FIP4Q86YS3 637 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 PHKBQ93100 1093 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 USP28Q96RU2 1077 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 MYL10Q9BUA6 226 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 SLC26A6Q9BXS9 759 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 EHD4Q9H223 541 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 MKNK2Q9HBH9 465 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 IL17RBQ9NRM6 502 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 TFIP11Q9UBB9 837 aaKnown RBP9.71□□□□□ -0.86
RNF4-220ENST00000513578 SWAP70Q9UH65 585 aa9.71□□□□□ -0.86
RNF4-220ENST00000513578 MORC2Q9Y6X9 1032 aaPredicted RBP9.71□□□□□ -0.86
RNF4-220ENST00000513578 MMP1P03956 469 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 KIF5BP33176 963 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 CRKP46108 304 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 GNAQP50148 359 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 GUCY1B3Q02153 619 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 EVX2Q03828 476 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 GRM4Q14833 912 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 FAM47AQ5JRC9 791 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 APOBEC3HQ6NTF7 200 aaKnown RBP9.7□□□□□ -0.86
RNF4-220ENST00000513578 CDC42EP5Q6NZY7 148 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 CCDC144CPQ8IYA2 1237 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 STK11IPQ8N1F8 1099 aa9.7□□□□□ -0.86
RNF4-220ENST00000513578 CTCFLQ8NI51 663 aaPredicted RBP9.7□□□□□ -0.86
RNF4-220ENST00000513578 NUP133Q8WUM0 1156 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms