RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 SMCR8Q8TEV9 937 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 GJD2Q9UKL4 321 aa13.63□□□□□ -0.23
LIMCH1-214ENST00000512228 SMARCA5O60264 1052 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 ADCY3O60266 1144 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 GUCY1A2P33402 732 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 TRIM32Q13049 653 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 TATDN1Q6P1N9 297 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 UBE2Q1Q7Z7E8 422 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 ERC1Q8IUD2 1116 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 RBPJLQ9UBG7 517 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 ZBTB21Q9ULJ3 1066 aa13.62□□□□□ -0.23
LIMCH1-214ENST00000512228 GOLIM4O00461 696 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 GH2P01242 217 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 CYP2D6P10635 497 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 PDE6AP16499 860 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 HOXA7P31268 230 aaPredicted RBP13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 MAP3K12Q12852 859 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 SLC9C2Q5TAH2 1124 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 CRACR2BQ8N4Y2 399 aaPredicted RBP13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 ACER1Q8TDN7 264 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 RNF208Q9H0X6 261 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 BOLA2Q9H3K6 86 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 DDX19BQ9UMR2 479 aa13.61□□□□□ -0.23
LIMCH1-214ENST00000512228 TNPO2O14787 897 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 PRKAB2O43741 272 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 GJB1P08034 283 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 ASNSP08243 561 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 SHMT1P34896 483 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 USP5P45974 858 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 GJA8P48165 433 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 FAM110CQ1W6H9 321 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 LCORLQ8N3X6 602 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 SDR42E1Q8WUS8 393 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 KIF1BPQ96EK5 621 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 BIN2Q9UBW5 565 aaPredicted RBP13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 ZNF532Q9HCE3 1301 aa13.6□□□□□ -0.23
LIMCH1-214ENST00000512228 BAZ2AQ9UIF9 1905 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 MAGEB6P1A0A0J9YX57 407 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 USP17L10C9JJH3 530 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 H0YGN5 161 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 INHAP05111 366 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 GABPAQ06546 454 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 IRF5Q13568 498 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 CLASRPQ8N2M8 674 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 AS3MTQ9HBK9 375 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 TAOK2Q9UL54 1235 aa13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 DDX60LQ5H9U9 1706 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-214ENST00000512228 C19orf81C9J6K1 198 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 IGSF3O75054 1194 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 SGPL1O95470 568 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 IFIT2P09913 472 aaKnown RBP13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 MS4A1P11836 297 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 GCLCP48506 637 aaPredicted RBP13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 ZYXQ15942 572 aaKnown RBP13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 HSP90AB4PQ58FF6 505 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 KIAA1755Q5JYT7 1200 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 SIAH1Q8IUQ4 282 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 SLC44A5Q8NCS7 719 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 SLAIN1Q8ND83 568 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 PXYLP1Q8TE99 480 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 U2AF1L4Q8WU68 220 aaKnown RBP13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 TBC1D2Q9BYX2 928 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 PORCNQ9H237 461 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 ARMT1Q9H993 441 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 MORF4L1Q9UBU8 362 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 SERPINB13Q9UIV8 391 aa13.58□□□□□ -0.24
LIMCH1-214ENST00000512228 CYP2D7A0A087X1C5 515 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 A0A1W2PRG0 241 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 RAB11FIP3O75154 756 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 CNMDO75829 334 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 HLA-DOAP06340 250 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 ATP5JP18859 108 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 HERVK_113P62684 666 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 RAB3GAP1Q15042 981 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 CERKLQ49MI3 558 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 HABP4Q5JVS0 413 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 DYNLL2Q96FJ2 89 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 DEFB118Q96PH6 123 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 EHD4Q9H223 541 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 DCP1AQ9NPI6 582 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 TMOD4Q9NZQ9 345 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 PNMA3Q9UL41 463 aa13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 COLQQ9Y215 455 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-214ENST00000512228 CYP2B6P20813 491 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 ADD2P35612 726 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 SEPT2Q15019 361 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 TTF1Q15361 905 aaPredicted RBP13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 USP17L2Q6R6M4 530 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 TTC6Q86TZ1 520 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 COA7Q96BR5 231 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 HAUS7Q99871 368 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 TRIM34Q9BYJ4 488 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 PAK6Q9NQU5 681 aaPredicted RBP13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 PAG1Q9NWQ8 432 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 MCM9Q9NXL9 1143 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 NAV1Q8NEY1 1877 aa13.56□□□□□ -0.24
LIMCH1-214ENST00000512228 RLFQ13129 1914 aa13.55□□□□□ -0.24
LIMCH1-214ENST00000512228 ALPK3Q96L96 1907 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms