RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 COMMD8Q9NX08 183 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 ZHX1Q9UKY1 873 aaPredicted RBP11.24□□□□□ -0.61
USP53-207ENST00000510852 BOLA2-SMG1P6H3BVE0 249 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 ARID5AQ03989 594 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 MFSD10Q14728 455 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 CT47A1Q5JQC4 288 aaPredicted RBP11.24□□□□□ -0.61
USP53-207ENST00000510852 TRAPPC3LQ5T215 181 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 UHMK1Q8TAS1 419 aaKnown RBP11.24□□□□□ -0.61
USP53-207ENST00000510852 ZNF69Q9UC07 566 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 SSUH2Q9Y2M2 353 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 RGPD3A6NKT7 1758 aaPredicted RBP11.23□□□□□ -0.61
USP53-207ENST00000510852 RGPD4Q7Z3J3 1758 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 ARFGEF2Q9Y6D5 1785 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 CDKN1CP49918 316 aaPredicted RBP11.23□□□□□ -0.61
USP53-207ENST00000510852 ZNF827Q17R98 1081 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 AKT1S1Q96B36 256 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 ISCA1Q9BUE6 129 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 UTP6Q9NYH9 597 aaKnown RBP11.23□□□□□ -0.61
USP53-207ENST00000510852 LUZP4Q9P127 313 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 NUP188Q5SRE5 1749 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.23□□□□□ -0.61
USP53-207ENST00000510852 GNAI3P08754 354 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 GCKRQ14397 625 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 ZNF396Q96N95 335 aaPredicted RBP11.23□□□□□ -0.61
USP53-207ENST00000510852 GINM1Q9NU53 330 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 NARFQ9UHQ1 456 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 PCDHB15Q9Y5E8 787 aa11.23□□□□□ -0.61
USP53-207ENST00000510852 PPP1R3GB7ZBB8 358 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 PRRT4C9JH25 899 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 KIF20AO95235 890 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 ADD2P35612 726 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 MECOMQ03112 1051 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 CCDC15Q0P6D6 951 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 FXNQ16595 210 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 TMEM259Q4ZIN3 620 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 BRDTQ58F21 947 aaPredicted RBP11.22□□□□□ -0.61
USP53-207ENST00000510852 TMX1Q9H3N1 280 aa11.22□□□□□ -0.61
USP53-207ENST00000510852 C9orf78Q9NZ63 289 aaPredicted RBP11.22□□□□□ -0.61
USP53-207ENST00000510852 SRP68Q9UHB9 627 aaKnown RBP11.22□□□□□ -0.61
USP53-207ENST00000510852 IBTKQ9P2D0 1353 aaPredicted RBP11.22□□□□□ -0.61
USP53-207ENST00000510852 N4BP2Q86UW6 1770 aaPredicted RBP11.22□□□□□ -0.61
USP53-207ENST00000510852 GRM8O00222 908 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 ZPR1O75312 459 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 CCDC172P0C7W6 258 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 UBTFL1P0CB47 393 aaPredicted RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 NEFHP12036 1026 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 GPTP24298 496 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 RFC4P35249 363 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 VAC14Q08AM6 782 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 TRIM28Q13263 835 aaKnown RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 GNL2Q13823 731 aaKnown RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 TRIM29Q14134 588 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 EAPPQ56P03 285 aaPredicted RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 OTUD6AQ7L8S5 288 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 JAMLQ86YT9 394 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 ARL6IP6Q8N6S5 226 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 CCDC191Q8NCU4 936 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 FAM126AQ9BYI3 521 aaPredicted RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 CHCHD3Q9NX63 227 aaKnown RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 MKS1Q9NXB0 559 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 TFCP2L1Q9NZI6 479 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 GNAI2P04899 355 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 CLK2P49760 499 aaKnown RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 USPL1Q5W0Q7 1092 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 CDC37L1Q7L3B6 337 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 GPR101Q96P66 508 aaPredicted RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 ALG2Q9H553 416 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 DCAF16Q9NXF7 216 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 PARP2Q9UGN5 583 aa11.21□□□□□ -0.61
USP53-207ENST00000510852 RBM19Q9Y4C8 960 aaKnown RBP11.21□□□□□ -0.61
USP53-207ENST00000510852 KLHL33A6NCF5 533 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 A6NCN8 305 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 MAPK1P28482 360 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 ZNF34Q8IZ26 560 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 FLCNQ8NFG4 579 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 ASB16Q96NS5 453 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 TMUB1Q9BVT8 246 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP53-207ENST00000510852 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 IKBKGQ9Y6K9 419 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 UTYO14607 1347 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 USP42Q9H9J4 1324 aaKnown RBP11.2□□□□□ -0.62
USP53-207ENST00000510852 NLRP10Q86W26 655 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 SMCR8Q8TEV9 937 aaPredicted RBP11.2□□□□□ -0.62
USP53-207ENST00000510852 RNF34Q969K3 372 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 AGAP3Q96P47 875 aa11.2□□□□□ -0.62
USP53-207ENST00000510852 RABL2AQ9UBK7 228 aaPredicted RBP11.2□□□□□ -0.62
USP53-207ENST00000510852 FBXO2Q9UK22 296 aaPredicted RBP11.2□□□□□ -0.62
USP53-207ENST00000510852 LRRFIP2Q9Y608 721 aaKnown RBP11.2□□□□□ -0.62
USP53-207ENST00000510852 EXOSC10Q01780 885 aaKnown RBP11.19□□□□□ -0.62
USP53-207ENST00000510852 FAM83BQ5T0W9 1011 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 UPF1Q92900 1129 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP53-207ENST00000510852 SKA1Q96BD8 255 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.19□□□□□ -0.62
USP53-207ENST00000510852 UBN2Q6ZU65 1347 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 UBR3Q6ZT12 1888 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 GTPBP10A4D1E9 387 aaKnown RBP11.19□□□□□ -0.62
USP53-207ENST00000510852 TMEM110-MUSTN1A8MSY1 372 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 H7C1W4 665 aa11.19□□□□□ -0.62
USP53-207ENST00000510852 HCLS1P14317 486 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms