RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZSCAN22P10073 491 aaPredicted RBP5.77□□□□□ -1.49
NUP54-208ENST00000508604 LMNB1P20700 586 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 MAPK8P45983 427 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 ATP2B2Q01814 1243 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 PCNX4Q63HM2 1172 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 ALG1LQ6GMV1 187 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 C14orf37Q86TY3 774 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 ALPK1Q96QP1 1244 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 SPG7Q9UQ90 795 aa5.77□□□□□ -1.49
NUP54-208ENST00000508604 CBX7O95931 251 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 C1QTNF9P0C862 333 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 HID1Q8IV36 788 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 ZSCAN29Q8IWY8 852 aaPredicted RBP5.76□□□□□ -1.49
NUP54-208ENST00000508604 ABHD4Q8TB40 342 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 ANKRD24Q8TF21 1146 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 WNT10AQ9GZT5 417 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 EPB41L4BQ9H329 900 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 DCP1AQ9NPI6 582 aaPredicted RBP5.76□□□□□ -1.49
NUP54-208ENST00000508604 SNCAIPQ9Y6H5 919 aa5.76□□□□□ -1.49
NUP54-208ENST00000508604 PRR33A8MZF0 331 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 CAP2P40123 477 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 KIR3DL1P43629 444 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 LETMD1Q6P1Q0 360 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 LILRA6Q6PI73 481 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 LRFN4Q6PJG9 635 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 CILP2Q8IUL8 1156 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 RETREG2Q8NC44 543 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 UBE2FQ969M7 185 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 SLAMF8Q9P0V8 285 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 ZSWIM5Q9P217 1185 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 CAPN6Q9Y6Q1 641 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 TCAF2A6NFQ2 919 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 SLBPQ14493 270 aaKnown RBP eCLIP5.75□□□□□ -1.49
NUP54-208ENST00000508604 INPP5AQ14642 412 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 TTC6Q86TZ1 520 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 PLPPR2Q96GM1 343 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 FAM8A1Q9UBU6 413 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 ST14Q9Y5Y6 855 aa5.75□□□□□ -1.49
NUP54-208ENST00000508604 NPIPB6E9PJ23 425 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 CIAPIN1Q6FI81 312 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 C1QL4Q86Z23 238 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 OSBPL7Q9BZF2 842 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 FBRSQ9HAH7 460 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 C19orf73Q9NVV2 129 aa5.74□□□□□ -1.49
NUP54-208ENST00000508604 CELA3AP09093 270 aa5.73□□□□□ -1.49
NUP54-208ENST00000508604 WIPI1Q5MNZ9 446 aaPredicted RBP5.73□□□□□ -1.49
NUP54-208ENST00000508604 LCNL1Q6ZST4 164 aa5.73□□□□□ -1.49
NUP54-208ENST00000508604 SV2BQ7L1I2 683 aa5.73□□□□□ -1.49
NUP54-208ENST00000508604 TMPRSS7Q7RTY8 843 aa5.73□□□□□ -1.49
NUP54-208ENST00000508604 ARID3AQ99856 593 aa5.73□□□□□ -1.49
NUP54-208ENST00000508604 TTF2Q9UNY4 1162 aaKnown RBP5.73□□□□□ -1.49
NUP54-208ENST00000508604 CST3P01034 146 aaPredicted RBP5.72□□□□□ -1.49
NUP54-208ENST00000508604 KCNA10Q16322 511 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 ATG14Q6ZNE5 492 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 XAGE3Q8WTP9 111 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 MYLIPQ8WY64 445 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 SLC26A8Q96RN1 970 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 C12orf49Q9H741 205 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 GNEQ9Y223 722 aaKnown RBP5.72□□□□□ -1.49
NUP54-208ENST00000508604 USP17L7P0C7H9 530 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 NKG7Q16617 165 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 RASIP1Q5U651 963 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 PRAMEF13Q5VWM6 474 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 DIEXFQ68CQ4 756 aaKnown RBP5.72□□□□□ -1.49
NUP54-208ENST00000508604 PIWIL2Q8TC59 973 aaKnown RBP5.72□□□□□ -1.49
NUP54-208ENST00000508604 KCNN1Q92952 543 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 SYTL4Q96C24 671 aaPredicted RBP5.72□□□□□ -1.49
NUP54-208ENST00000508604 RAPGEFL1Q9UHV5 662 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 TMEM59LQ9UK28 342 aa5.72□□□□□ -1.49
NUP54-208ENST00000508604 GRK4P32298 578 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 ETV3P41162 512 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 HK2P52789 917 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 TTBK2Q6IQ55 1244 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 RIN3Q8TB24 985 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 FRMD6Q96NE9 622 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 TRIT1Q9H3H1 467 aaKnown RBP5.71□□□□□ -1.5
NUP54-208ENST00000508604 CNTNAP4Q9C0A0 1308 aa5.71□□□□□ -1.5
NUP54-208ENST00000508604 B8ZZF3 427 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 FMR1Q06787 632 aaKnown RBP eCLIP5.7□□□□□ -1.5
NUP54-208ENST00000508604 TNK2Q07912 1038 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 CDH24Q86UP0 819 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 AMIGO3Q86WK7 504 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 CREG2Q8IUH2 290 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 KRTAP4-2Q9BYR5 136 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 TACC3Q9Y6A5 838 aa5.7□□□□□ -1.5
NUP54-208ENST00000508604 PRRG2O14669 202 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 KRT1P04264 644 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 MED14OSP0DP75 135 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 GLDCP23378 1020 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 PTPN11Q06124 597 aaPredicted RBP5.69□□□□□ -1.5
NUP54-208ENST00000508604 PDE4BQ07343 736 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 TTLL10Q6ZVT0 673 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 DNAJC25-GNG10A0A024R161 153 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 NUAK1O60285 661 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 BRD1O95696 1058 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 PGRP06401 933 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 RALGPS1Q5JS13 557 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.69□□□□□ -1.5
NUP54-208ENST00000508604 GAL3ST3Q96A11 431 aa5.69□□□□□ -1.5
NUP54-208ENST00000508604 CD320Q9NPF0 282 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms