RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 HNRNPLLQ8WVV9 542 aaKnown RBP6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM46AQ96IP4 442 aaKnown RBP6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 YIPF2Q9BWQ6 316 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 TRIM55Q9BYV6 548 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 CNNM2Q9H8M5 875 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 FBRSQ9HAH7 460 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 ACTR10Q9NZ32 417 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 UPK3BL1B0FP48 263 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 UPK3BL2E5RIL1 263 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 U2SURPO15042 1029 aaKnown RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 NME1P15531 152 aaKnown RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 RAG1P15918 1043 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 RAB6AP20340 208 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 GUCY2CP25092 1073 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 CASP7P55210 303 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 SLBPQ14493 270 aaKnown RBP eCLIP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 NKG7Q16617 165 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 UVSSAQ2YD98 709 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 ARSHQ5FYA8 562 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 INTS3Q68E01 1043 aaKnown RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 NLRC3Q7RTR2 1065 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 DZIP1LQ8IYY4 767 aaKnown RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 TAB3Q8N5C8 712 aaPredicted RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 C19orf47Q8N9M1 422 aaKnown RBP6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 OSBPL2Q9H1P3 480 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 ACSS3Q9H6R3 686 aa6.19□□□□□ -1.42
HMGB1P28-201ENST00000507778 LOC105371045A0A1W2PR82 267 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 CST3P01034 146 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 CAP2P40123 477 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 CDPF1Q6NVV7 123 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 UBE3DQ7Z6J8 389 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 TTC6Q86TZ1 520 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 SLFN12Q8IYM2 578 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 PHACTR4Q8IZ21 702 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 FBLIM1Q8WUP2 373 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 UTP4Q969X6 686 aaKnown RBP6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 TNKS2Q9H2K2 1166 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 ZSWIM4Q9H7M6 989 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 SIRPGQ9P1W8 387 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 SLC12A7Q9Y666 1083 aa6.18□□□□□ -1.42
HMGB1P28-201ENST00000507778 SHROOM4Q9ULL8 1493 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 A0A1W2PQH9 124 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 KRBA1A5PL33 1030 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 TNFRSF10CO14798 259 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 LRIG2O94898 1065 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 NFICP08651 508 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 BMP3P12645 472 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 RXRBP28702 533 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 MAP7Q14244 749 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 FXNQ16595 210 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 SGO2Q562F6 1265 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 PRAMEF13Q5VWM6 474 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 EZH1Q92800 747 aaPredicted RBP6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 DCAF5Q96JK2 942 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 MEGF10Q96KG7 1140 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 MYRFLQ96LU7 910 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 SLC9A7Q96T83 725 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 DPH2Q9BQC3 489 aaPredicted RBP6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 FOXQ1Q9C009 403 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 DAGLAQ9Y4D2 1042 aa6.17□□□□□ -1.42
HMGB1P28-201ENST00000507778 ACRP10323 421 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 MAP4P27816 1152 aaKnown RBP6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 SERINC3Q13530 473 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 LARP1BQ659C4 914 aaKnown RBP6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 UNC5AQ6ZN44 842 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 ARMCX6Q7L4S7 300 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 CD163Q86VB7 1156 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM20CQ8IXL6 584 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 ARMC10Q8N2F6 343 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 MFSD2AQ8NA29 543 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 MKL1Q969V6 931 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 CCDC74BQ96LY2 380 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 KIF2CQ99661 725 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 SEMA6CQ9H3T2 930 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 LGR6Q9HBX8 967 aa6.16□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM95CA0A1B0GW59 222 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 C1QTNF9BB2RNN3 333 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 K7ELQ4 463 aaPredicted RBP6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 RGS13O14921 159 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 DHX15O43143 795 aaKnown RBP6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 GBP1P32455 592 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 CCNFP41002 786 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 CHRNA4P43681 627 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 GSK3AP49840 483 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 NFE2L2Q16236 605 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 NOP9Q86U38 636 aaKnown RBP6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 CELF2-AS1Q8N7Q2 184 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 XAGE3Q8WTP9 111 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 CYB5D2Q8WUJ1 264 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 KCNF1Q9H3M0 494 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 ST7Q9NRC1 585 aa6.15□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM86C2PA6NEL3 165 aa6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 POLR2BP30876 1174 aaKnown RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 BMS1Q14692 1282 aaKnown RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 NFKBIBQ15653 356 aa6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 ZYXQ15942 572 aaKnown RBP6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 DDR2Q16832 855 aa6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 PAOXQ6QHF9 649 aa6.14□□□□□ -1.43
HMGB1P28-201ENST00000507778 LRP10Q7Z4F1 713 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 169.6 ms