RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RPAP2Q8IXW5 612 aaPredicted RBP9.8□□□□□ -0.84
SCN1A-207ENST00000507401 ZKSCAN4Q969J2 545 aaPredicted RBP9.8□□□□□ -0.84
SCN1A-207ENST00000507401 NSUN4Q96CB9 384 aaKnown RBP9.8□□□□□ -0.84
SCN1A-207ENST00000507401 ZFRQ96KR1 1074 aaKnown RBP9.8□□□□□ -0.84
SCN1A-207ENST00000507401 WRNIP1Q96S55 665 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 R3HDMLQ9H3Y0 253 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 SNCAIPQ9Y6H5 919 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 MROH7-TTC4A0A0A0MT08 1334 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 CCL15-CCL14A0A0B4J2E2 113 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 GOLGA8CPA6NN73 597 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 WDHD1O75717 1129 aaPredicted RBP9.79□□□□□ -0.84
SCN1A-207ENST00000507401 CETPP11597 493 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 MCAMP43121 646 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 BTDP43251 543 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 RGS3P49796 1198 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 TCP10Q12799 353 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 PPIL2Q13356 520 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 SNAPC2Q13487 334 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 CCL15Q16663 113 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 HSP90AB4PQ58FF6 505 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 NOL9Q5SY16 702 aaKnown RBP9.79□□□□□ -0.84
SCN1A-207ENST00000507401 CEP85Q6P2H3 762 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 ERC1Q8IUD2 1116 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 ZFPM1Q8IX07 1006 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 TTC13Q8NBP0 860 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 PANK1Q8TE04 598 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 BRI3BPQ8WY22 251 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 C1orf115Q9H7X2 142 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 RAI14Q9P0K7 980 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 LRP2BPQ9P2M1 347 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 RCAN3Q9UKA8 241 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 DDX19BQ9UMR2 479 aa9.79□□□□□ -0.84
SCN1A-207ENST00000507401 OTOFQ9HC10 1997 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 PHF20L1A8MW92 1017 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 IRF6O14896 467 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 RHBDL3P58872 404 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 PPP4CP60510 307 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 CRHR2Q13324 411 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 ARHGEF6Q15052 776 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 TTC39AQ5SRH9 613 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 FBXO46Q6PJ61 603 aaPredicted RBP9.78□□□□□ -0.84
SCN1A-207ENST00000507401 TMED8Q6PL24 325 aaPredicted RBP9.78□□□□□ -0.84
SCN1A-207ENST00000507401 TBC1D9Q6ZT07 1266 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 ZNF384Q8TF68 577 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 EAF2Q96CJ1 260 aaPredicted RBP9.78□□□□□ -0.84
SCN1A-207ENST00000507401 ERO1AQ96HE7 468 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 DBNDD2Q9BQY9 259 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 ZFYVE28Q9HCC9 887 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 ZBTB40Q9NUA8 1239 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 PLA2G2EQ9NZK7 142 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 AK9Q5TCS8 1911 aa9.78□□□□□ -0.84
SCN1A-207ENST00000507401 RFX7Q2KHR2 1363 aa9.77□□□□□ -0.84
SCN1A-207ENST00000507401 SOWAHBA6NEL2 793 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 CXCL11O14625 94 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 BAG3O95817 575 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 CYP2E1P05181 493 aaPredicted RBP9.77□□□□□ -0.85
SCN1A-207ENST00000507401 INPP5BP32019 993 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 SP3Q02447 781 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 PDE3AQ14432 1141 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 PI16Q6UXB8 463 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 SH3BP5LQ7L8J4 393 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 ANKK1Q8NFD2 765 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 DBNLQ9UJU6 430 aaKnown RBP9.77□□□□□ -0.85
SCN1A-207ENST00000507401 HPS5Q9UPZ3 1129 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 KCNH4Q9UQ05 1017 aa9.77□□□□□ -0.85
SCN1A-207ENST00000507401 ATRNL1Q5VV63 1379 aa9.76□□□□□ -0.85
SCN1A-207ENST00000507401 DDTLA6NHG4 134 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 CTNND1O60716 968 aaKnown RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 HMMRO75330 724 aa9.76□□□□□ -0.85
SCN1A-207ENST00000507401 MLLT1Q03111 559 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 TAF1CQ15572 869 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 NAA16Q6N069 864 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 ZSCAN29Q8IWY8 852 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 FAM43AQ8N2R8 423 aa9.76□□□□□ -0.85
SCN1A-207ENST00000507401 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 NOL10Q9BSC4 688 aaKnown RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 DDX4Q9NQI0 724 aaKnown RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 SNRKQ9NRH2 765 aa9.76□□□□□ -0.85
SCN1A-207ENST00000507401 RBM27Q9P2N5 1060 aaKnown RBP9.76□□□□□ -0.85
SCN1A-207ENST00000507401 COL2A1P02458 1487 aaPredicted RBP9.75□□□□□ -0.85
SCN1A-207ENST00000507401 BTBD19C9JJ37 291 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 TLR2O60603 784 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 RAB11FIP3O75154 756 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 PICALMQ13492 652 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 OTOP1Q7RTM1 612 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 ANKRD23Q86SG2 305 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 PACS2Q86VP3 889 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 CERS3Q8IU89 383 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 SCYL3Q8IZE3 742 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 RHPN1Q8TCX5 695 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 CCDC8Q9H0W5 538 aaPredicted RBP9.75□□□□□ -0.85
SCN1A-207ENST00000507401 DHX36Q9H2U1 1008 aaKnown RBP9.75□□□□□ -0.85
SCN1A-207ENST00000507401 PICK1Q9NRD5 415 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 EXOC6BQ9Y2D4 811 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 COG6Q9Y2V7 657 aa9.75□□□□□ -0.85
SCN1A-207ENST00000507401 GNRH1P01148 92 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 PTPRAP18433 802 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 ZAP70P43403 619 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 FASTKD5Q7L8L6 764 aaKnown RBP9.74□□□□□ -0.85
SCN1A-207ENST00000507401 FOXP4Q8IVH2 680 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms