RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 APOA5Q6Q788 366 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CYP26C1Q6V0L0 522 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 KRBA2Q6ZNG9 492 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 LRRC8AQ8IWT6 810 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 UBE2Q2Q8WVN8 375 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 ZBTB1Q9Y2K1 713 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 TNKSO95271 1327 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 RICTORQ6R327 1708 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 SETD1BQ9UPS6 1966 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CEMIPQ8WUJ3 1361 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 FMNL1O95466 1100 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CRKLP46109 303 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CTR9Q6PD62 1173 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CCDC42Q96M95 316 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 UBE4AQ14139 1066 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 PUS7LQ9H0K6 701 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 ZNF219Q9P2Y4 722 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CEP170BQ9Y4F5 1589 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SEMA3EO15041 775 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 MATR3P43243 847 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SMARCC2Q8TAQ2 1214 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 MMRN2Q9H8L6 949 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SH2B2O14492 632 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 CCNT1O60563 726 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 NEK11Q8NG66 645 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 FOXP1Q9H334 677 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 LOC102724428A0A0B4J2F2 783 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SPDYE3A6NKU9 549 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 DNA2P51530 1060 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SIK1P57059 783 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 PPP2R3AQ06190 1150 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 SPECC1LQ69YQ0 1117 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 PLIN2Q99541 437 aa12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 PPP1R1BQ9UD71 204 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-205ENST00000503057 GYG1P46976 350 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 PDE4DQ08499 809 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 NONOQ15233 471 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 TSGA10IPQ3SY00 556 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 SYCP3Q8IZU3 236 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 SPAG5Q96R06 1193 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 GUCA1BQ9UMX6 200 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 ANKRD26Q9UPS8 1709 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 MRPL12P52815 198 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 KIF23Q02241 960 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 LINC00301Q8NCQ3 95 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 SDR42E1Q8WUS8 393 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 GLT8D2Q9H1C3 349 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 USP17L12C9JPN9 530 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 USP17L21D6R901 530 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 NOP2P46087 812 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 FAM98CQ17RN3 349 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 PIGBQ92521 554 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 HDAC9Q9UKV0 1011 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 TFAP4Q01664 338 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 BRINP3Q76B58 766 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 NUP58Q9BVL2 599 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 ABCC12Q96J65 1359 aa12.12□□□□□ -0.47
LIMCH1-205ENST00000503057 TMCO5BA8MYB1 307 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 TMTC1Q8IUR5 882 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 VPS16Q9H269 839 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 WWC3Q9ULE0 1092 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 C1orf167Q5SNV9 1468 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 WDR19Q8NEZ3 1342 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 CETN2P41208 172 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 NOC4LQ9BVI4 516 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 RIMBP2O15034 1052 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 EVCP57679 992 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 RABL6Q3YEC7 729 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 FAM47AQ5JRC9 791 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 PPP4R3AQ6IN85 833 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 TBC1D5Q92609 795 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 CDHR2Q9BYE9 1310 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 BTBD18B2RXH4 712 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 CCDC65Q8IXS2 484 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 TTLL11Q8NHH1 800 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 TBC1D22AQ8WUA7 517 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 RNF26Q9BY78 433 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 PARP3Q9Y6F1 533 aa12.11□□□□□ -0.47
LIMCH1-205ENST00000503057 ARID4AP29374 1257 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 NELFBQ8WX92 580 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 CCDC51Q96ER9 411 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 OVOS2A0A0G2JMS6 1433 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 PALLDQ8WX93 1383 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 IKBKBO14920 756 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 GTF2F1P35269 517 aaKnown RBP eCLIP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 LRMPQ12912 555 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 GALNT17Q6IS24 598 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 NAPGQ99747 312 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 CMTR1Q8N1G2 835 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 CSGALNACT2Q8N6G5 542 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 PYCARDQ9ULZ3 195 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 RPAP1Q9BWH6 1393 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 DDIT3P35638 169 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 ADCY7P51828 1080 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 C11orf57Q6ZUT1 292 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 TGFBRAP1Q8WUH2 860 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 PUF60Q9UHX1 559 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 SCG2P13521 617 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 TBC1D8BQ0IIM8 1120 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 CCDC122Q5T0U0 273 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms