RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	PTK7	Q13308	1070 aa		7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CRTC2	Q53ET0	693 aa	Predicted RBP	7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325	BEND4	Q6ZU67	534 aa		7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ABI1	Q8IZP0	508 aa		7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CARD10	Q9BWT7	1032 aa		7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.01	□□□□□ -1.29
HMGXB4-208	ENST00000498325		A0A1W2PP64	1363 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	INSR	P06213	1382 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	WDR64	B1ANS9	1081 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	BMP3	P12645	472 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	POLD1	P28340	1107 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CDC27	P30260	824 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	WDR43	Q15061	677 aa	Known RBP eCLIP	7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	FAM117B	Q6P1L5	589 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	MARCH10	Q8NA82	808 aa	Predicted RBP	7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	KLHL23	Q8NBE8	558 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CFAP53	Q96M91	514 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	7	□□□□□ -1.29	3e-16	■■■■■ 205
HMGXB4-208	ENST00000498325	LRFN2	Q9ULH4	789 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ANGEL1	Q9UNK9	670 aa	Known RBP	7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CRYBG1	Q9Y4K1	1723 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PHRF1	Q9P1Y6	1649 aa	Known RBP	7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PPIP5K1	Q6PFW1	1433 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ALS2	Q96Q42	1657 aa		7	□□□□□ -1.29
HMGXB4-208	ENST00000498325	TRPM3	Q9HCF6	1732 aa	Predicted RBP	6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PAPPA	Q13219	1627 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	FSCN2	O14926	492 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	SMNDC1	O75940	238 aa	Known RBP eCLIP	6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	WEE1	P30291	646 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	HOXA10	P31260	410 aa	Predicted RBP	6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ATP11A	P98196	1134 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CEP135	Q66GS9	1140 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ANKMY2	Q8IV38	441 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	SPACA7	Q96KW9	195 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	NMRK2	Q9NPI5	230 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ZBED9	Q6R2W3	1325 aa		6.99	□□□□□ -1.29
HMGXB4-208	ENST00000498325	RGPD8	O14715	1765 aa	Predicted RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	FYB1	O15117	783 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	DDX3Y	O15523	660 aa	Known RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	TMEM132A	Q24JP5	1023 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PIM2	Q9P1W9	311 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	THRAP3	Q9Y2W1	955 aa	Known RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	SBF2	Q86WG5	1849 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CPSF1	Q10570	1443 aa	Known RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PARP4	Q9UKK3	1724 aa	Known RBP	6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PNPLA7	Q6ZV29	1317 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	CD163L1	Q9NR16	1453 aa		6.98	□□□□□ -1.29
HMGXB4-208	ENST00000498325	POLR3A	O14802	1390 aa	Predicted RBP	6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L15	C9J2P7	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L10	C9JJH3	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L13	C9JLJ4	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L12	C9JPN9	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L11	C9JVI0	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L21	D6R901	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L18	D6R9N7	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L22	D6RA61	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L17	D6RBQ6	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L19	D6RCP7	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L20	D6RJB6	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	C8A	P07357	584 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	USP17L24	Q0WX57	530 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	HYAL2	Q12891	473 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	DDB1	Q16531	1140 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ANKRD34A	Q69YU3	496 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	EDC4	Q6P2E9	1401 aa	Known RBP	6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ANKAR	Q7Z5J8	1434 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	OR13H1	Q8NG92	308 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	UBASH3B	Q8TF42	649 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	MFSD14A	Q96MC6	490 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	GGNBP2	Q9H3C7	697 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	GTF3C3	Q9Y5Q9	886 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	PRR36	Q9H6K5	1346 aa		6.97	□□□□□ -1.29
HMGXB4-208	ENST00000498325	ITSN1	Q15811	1721 aa		6.96	□□□□□ -1.29
HMGXB4-208	ENST00000498325	COL24A1	Q17RW2	1714 aa		6.96	□□□□□ -1.29
HMGXB4-208	ENST00000498325	BCL9	O00512	1426 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	TNNT2	P45379	298 aa	Predicted RBP	6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	MTHFS	P49914	203 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	TRIP4	Q15650	581 aa	Predicted RBP	6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	POU5F2	Q8N7G0	328 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	NGDN	Q8NEJ9	315 aa	Known RBP	6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	GIMAP7	Q8NHV1	300 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	ASIC4	Q96FT7	647 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	COG3	Q96JB2	828 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	NUDC	Q9Y266	331 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	HIF3A	Q9Y2N7	669 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	LEMD3	Q9Y2U8	911 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	LRRC37A3	O60309	1634 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	ACE	P12821	1306 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	ANKRD26	Q9UPS8	1709 aa		6.96	□□□□□ -1.3
HMGXB4-208	ENST00000498325	KIF20B	Q96Q89	1820 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	FAM196B	A6NMK8	535 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	FAM177B	A6PVY3	158 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	ADAM11	O75078	769 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	PREP	P48147	710 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	NUTM2G	Q5VZR2	741 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	NGEF	Q8N5V2	710 aa		6.95	□□□□□ -1.3
HMGXB4-208	ENST00000498325	SEC31B	Q9NQW1	1179 aa		6.95	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms