RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 ZNF444Q8N0Y2 327 aaPredicted RBP12.43□□□□□ -0.42
PTPRN-218ENST00000497977 LCORLQ8N3X6 602 aa12.43□□□□□ -0.42
PTPRN-218ENST00000497977 ZNF296Q8WUU4 475 aaPredicted RBP12.43□□□□□ -0.42
PTPRN-218ENST00000497977 PTPN18Q99952 460 aa12.43□□□□□ -0.42
PTPRN-218ENST00000497977 GTF3C3Q9Y5Q9 886 aa12.43□□□□□ -0.42
PTPRN-218ENST00000497977 SSC5DA1L4H1 1573 aa12.43□□□□□ -0.42
PTPRN-218ENST00000497977 RFX7Q2KHR2 1363 aa12.43□□□□□ -0.42
PTPRN-218ENST00000497977 BTBD19C9JJ37 291 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 USP17L21D6R901 530 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 MPHOSPH10O00566 681 aaKnown RBP12.42□□□□□ -0.42
PTPRN-218ENST00000497977 TDO2P48775 406 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 BACE1P56817 501 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 PDE4BQ07343 736 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 CRHR2Q13324 411 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 SBK1Q52WX2 424 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 IFFO2Q5TF58 517 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 C12orf60Q5U649 245 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 TSHZ3Q63HK5 1081 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 CENPQQ7L2Z9 268 aaPredicted RBP12.42□□□□□ -0.42
PTPRN-218ENST00000497977 SMCR8Q8TEV9 937 aaPredicted RBP12.42□□□□□ -0.42
PTPRN-218ENST00000497977 SDR42E1Q8WUS8 393 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 CNKSR2Q8WXI2 1034 aa12.42□□□□□ -0.42
PTPRN-218ENST00000497977 PUS7LQ9H0K6 701 aaKnown RBP12.42□□□□□ -0.42
PTPRN-218ENST00000497977 MYO5AQ9Y4I1 1855 aaKnown RBP12.42□□□□□ -0.42
PTPRN-218ENST00000497977 GPAA1O43292 621 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 GCLCP48506 637 aaPredicted RBP12.41□□□□□ -0.42
PTPRN-218ENST00000497977 PLCD1P51178 756 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 PRMT2P55345 433 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 RAB3GAP1Q15042 981 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 MCMDC2Q4G0Z9 681 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 ERICH6BQ5W0A0 696 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 USP17L2Q6R6M4 530 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 TMEM179Q6ZVK1 233 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 NBPF11Q86T75 865 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 FAM43AQ8N2R8 423 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 OTUD7AQ8TE49 926 aaPredicted RBP12.41□□□□□ -0.42
PTPRN-218ENST00000497977 GTF3C2Q8WUA4 911 aaPredicted RBP12.41□□□□□ -0.42
PTPRN-218ENST00000497977 NAPBQ9H115 298 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 AGTPBP1Q9UPW5 1226 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 DOCK2Q92608 1830 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 MYH7P12883 1935 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 AKAP11Q9UKA4 1901 aa12.41□□□□□ -0.42
PTPRN-218ENST00000497977 TRPM7Q96QT4 1865 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 FAM196BA6NMK8 535 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 MINDY4BA8MYZ0 360 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 GH2P01242 217 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 SH3D19Q5HYK7 790 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 CCAR1Q8IX12 1150 aaKnown RBP12.4□□□□□ -0.42
PTPRN-218ENST00000497977 OSBP2Q969R2 916 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 FEZ1Q99689 392 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 KANSL2Q9H9L4 492 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 EFCC1Q9HA90 598 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 ARHGEF10LQ9HCE6 1279 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 ZBTB21Q9ULJ3 1066 aa12.4□□□□□ -0.42
PTPRN-218ENST00000497977 PRKAB2O43741 272 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 NT5C2P49902 561 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 IRX3P78415 501 aaPredicted RBP12.39□□□□□ -0.43
PTPRN-218ENST00000497977 SLC4A8Q2Y0W8 1093 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 ZMYM1Q5SVZ6 1142 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 CTR9Q6PD62 1173 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 PLEKHM2Q8IWE5 1019 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 RUFY2Q8WXA3 655 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 DIAPH3Q9NSV4 1193 aa12.39□□□□□ -0.43
PTPRN-218ENST00000497977 SALL3Q9BXA9 1300 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 GSG1L2A8MUP6 293 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 GDF11O95390 407 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 FMNL1O95466 1100 aaPredicted RBP12.38□□□□□ -0.43
PTPRN-218ENST00000497977 HOXA7P31268 230 aaPredicted RBP12.38□□□□□ -0.43
PTPRN-218ENST00000497977 CDK8P49336 464 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 GABPAQ06546 454 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 FBXO46Q6PJ61 603 aaPredicted RBP12.38□□□□□ -0.43
PTPRN-218ENST00000497977 C16orf86Q6ZW13 317 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 IFNL3Q8IZI9 196 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 KIAA1683Q9H0B3 1180 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 HOXC10Q9NYD6 342 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 TRIM17Q9Y577 477 aa12.38□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L15C9J2P7 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L13C9JLJ4 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L11C9JVI0 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L18D6R9N7 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L22D6RA61 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L17D6RBQ6 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L19D6RCP7 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L20D6RJB6 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 SDSP20132 328 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 HMGCS2P54868 508 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 USP17L24Q0WX57 530 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 MTMR2Q13614 643 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 GPAT2Q6NUI2 795 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 C17orf99Q6UX52 265 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 LPAR1Q92633 364 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 MCOLN1Q9GZU1 580 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 CTNNA3Q9UI47 895 aa12.37□□□□□ -0.43
PTPRN-218ENST00000497977 PCP11498 1178 aaKnown RBP12.36□□□□□ -0.43
PTPRN-218ENST00000497977 PDE4AP27815 886 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 SHMT1P34896 483 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 FCGRTP55899 365 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 ALX1Q15699 326 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms