RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	NEDD9	Q14511	834 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	EZH2	Q15910	746 aa	Known RBP	11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	LMBR1L	Q6UX01	489 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	COPS6	Q7L5N1	327 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	CNGA4	Q8IV77	575 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	ANKRD13C	Q8N6S4	541 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	LINS1	Q8NG48	757 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	XAGE3	Q8WTP9	111 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	COG1	Q8WTW3	980 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	HNRNPLL	Q8WVV9	542 aa	Known RBP	11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	ZKSCAN3	Q9BRR0	538 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	WWC3	Q9ULE0	1092 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	NRXN1	Q9ULB1	1477 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	FAM170A	A1A519	330 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	PPFIA1	Q13136	1202 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	SUGP1	Q8IWZ8	645 aa	Known RBP	11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	KBTBD3	Q8NAB2	608 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	MSANTD4	Q8NCY6	345 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	ZNF594	Q96JF6	807 aa	Predicted RBP	11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	CDHR2	Q9BYE9	1310 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	BAIAP2L1	Q9UHR4	511 aa		11.96	□□□□□ -0.49
TRAPPC12-223	ENST00000497597	HGS	O14964	777 aa	Predicted RBP	11.96	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	SF3B2	Q13435	895 aa	Known RBP	11.96	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	HLTF	Q14527	1009 aa	Known RBP eCLIP	11.96	□□□□□ -0.5	7e-7	■■■□□ 15.5
TRAPPC12-223	ENST00000497597	MED23	Q9ULK4	1368 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	APBA1	Q02410	837 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	PTPRO	Q16827	1216 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CCDC96	Q2M329	555 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CCDC121	Q6ZUS5	278 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MLKL	Q8NB16	471 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ARL8A	Q96BM9	186 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	RBM33	Q96EV2	1170 aa	Known RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	UBAC1	Q9BSL1	405 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	RAB21	Q9UL25	225 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ZC3H13	Q5T200	1668 aa	Known RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MROH1	Q8NDA8	1641 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MYO3A	Q8NEV4	1616 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	EFCAB6	Q5THR3	1501 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	COL15A1	P39059	1388 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ESYT3	A0FGR9	886 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597		B4E1Z4	1266 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MFAP3L	O75121	409 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MCM3	P25205	808 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ELF1	P32519	619 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	GCK	P35557	465 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	USP14	P54578	494 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TMED8	Q6PL24	325 aa	Predicted RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ZNF274	Q96GC6	653 aa	Predicted RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ZNF609	O15014	1411 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	IDH1	O75874	414 aa	Known RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	EZR	P15311	586 aa	Known RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ATP5J	P18859	108 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	SARNP	P82979	210 aa	Known RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	NCOA7	Q8NI08	942 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	PLIN2	Q99541	437 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	INCENP	Q9NQS7	918 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	EHD2	Q9NZN4	543 aa		11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.95	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	SETBP1	Q9Y6X0	1596 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	KRT14	P02533	472 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MICALCL	Q6ZW33	695 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	B4GALNT4	Q76KP1	1039 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CABP5	Q9NP86	173 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TUBE1	Q9UJT0	475 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ADGRB3	O60242	1522 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	OPA1	O60313	960 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	NR5A1	Q13285	461 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CFAP58	Q5T655	872 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CYP26C1	Q6V0L0	522 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	IQCA1	Q86XH1	822 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TMTC1	Q8IUR5	882 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	DIS3L2	Q8IYB7	885 aa	Known RBP	11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TACO1	Q9BSH4	297 aa	Known RBP	11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MTMR7	Q9Y216	660 aa		11.94	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TRIM21	P19474	475 aa	Known RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CDC25C	P30307	473 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	PNMA8A	Q86V59	439 aa	Predicted RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ARHGEF25	Q86VW2	580 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CPS1	P31327	1500 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	USP42	Q9H9J4	1324 aa	Known RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	PDHB	P11177	359 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	HDGF	P51858	240 aa	Known RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	TMEM67	Q5HYA8	995 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	HDAC7	Q8WUI4	952 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	MAST3	O60307	1309 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597		M0R2C6	588 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	EIF3H	O15372	352 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ZBTB43	O43298	467 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	USP5	P45974	858 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	ERVK-24	P63145	666 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CKAP4	Q07065	602 aa	Known RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CCDC40	Q4G0X9	1142 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	PI16	Q6UXB8	463 aa		11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	LUC7L2	Q9Y383	392 aa	Known RBP	11.93	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	GOLGA6L10	A6NI86	522 aa		11.92	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	IFIT3	O14879	490 aa	Known RBP	11.92	□□□□□ -0.5
TRAPPC12-223	ENST00000497597	CHUK	O15111	745 aa		11.92	□□□□□ -0.5

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