RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 COL22A1Q8NFW1 1626 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 POLR3GO15318 223 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 NMT2O60551 498 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 URI1O94763 535 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 MMP1P03956 469 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 CDC25BP30305 580 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 FANCBQ8NB91 859 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 C8orf37Q96NL8 207 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 RIOK1Q9BRS2 568 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 FANCCQ00597 558 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 FOXP4Q8IVH2 680 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 TRIM22Q8IYM9 498 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 CRACR2BQ8N4Y2 399 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF446Q9NWS9 450 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 VPS54Q9P1Q0 977 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 HPSEQ9Y251 543 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 NRAPQ86VF7 1730 aa18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 SEC31AO94979 1220 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 SLU7O95391 586 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 RBM6P78332 1123 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 METTL16Q86W50 562 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 GTPBP4Q9BZE4 634 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 AATFQ9NY61 560 aaKnown RBP eCLIP18.97■□□□□ 0.63
CCDC88B-210ENST00000494566 NCAPHQ15003 741 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 CAVIN4Q5BKX8 364 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 USP49Q70CQ1 688 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF804BA4D1E1 1349 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 BCORQ6W2J9 1755 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 PLEKHA8P1O95397 391 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 ARHGAP29Q52LW3 1261 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 UTP14CQ5TAP6 766 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 RESP18Q5W5W9 173 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 TXNRD3Q86VQ6 643 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 ENAHQ8N8S7 591 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 CABP5Q9NP86 173 aa18.96■□□□□ 0.63
CCDC88B-210ENST00000494566 PPP6R2O75170 966 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 PRDX5P30044 214 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 NOM1Q5C9Z4 860 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 EARS2Q5JPH6 523 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 CREBRFQ8IUR6 639 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 CNNM3Q8NE01 707 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 GNL3LQ9NVN8 582 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 BSDC1Q9NW68 430 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 KCNH3Q9ULD8 1083 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 UBASH3AP57075 661 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 SAFBQ15424 915 aaKnown RBP eCLIP18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 FAM47AQ5JRC9 791 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 JMYQ8N9B5 988 aa18.95■□□□□ 0.62
CCDC88B-210ENST00000494566 RTL9Q8NET4 1388 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 USP17L12C9JPN9 530 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 USP17L21D6R901 530 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 CYP2D6P10635 497 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 ZNF397Q8NF99 534 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 FANCLQ9NW38 375 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 SEC23AQ15436 765 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 ESR2Q92731 530 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 SMARCC1Q92922 1105 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 FEZ1Q99689 392 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 DESI2Q9BSY9 194 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 RNF41Q9H4P4 317 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 PCDHA5Q9Y5H7 936 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 GNPATO15228 680 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 PRR29P0C7W0 189 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 ADKP55263 362 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 HSD3B7Q9H2F3 369 aa18.94■□□□□ 0.62
CCDC88B-210ENST00000494566 TIAM2Q8IVF5 1701 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 STK36Q9NRP7 1315 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 WNT7AO00755 349 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 PDE4BQ07343 736 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 UBE4AQ14139 1066 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 NBPF5PQ86XG9 351 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 KRI1Q8N9T8 703 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 CPLX3Q8WVH0 158 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 MYH13Q9UKX3 1938 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 CACNA1SQ13698 1873 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 FANCGO15287 622 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 POLR2DO15514 142 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 DEXIO95424 95 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 CASP1P29466 404 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 MECOMQ03112 1051 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 SF3B3Q15393 1217 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 CARD6Q9BX69 1037 aa18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 V9GY48 417 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-210ENST00000494566 BMP6P22004 513 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 KARSQ15046 597 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 IFIT1BQ5T764 474 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 CTR9Q6PD62 1173 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 CLEC4GQ6UXB4 293 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 KRBA2Q6ZNG9 492 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 NGLY1Q96IV0 654 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 ZFP91Q96JP5 570 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 ZSCAN10Q96SZ4 725 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 CUTAO60888 179 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 KRT222Q8N1A0 295 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 GPR101Q96P66 508 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 SERTAD1Q9UHV2 236 aa18.92■□□□□ 0.62
CCDC88B-210ENST00000494566 SLFN14P0C7P3 912 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 RPS8P62241 208 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 WASF1Q92558 559 aa18.91■□□□□ 0.62
CCDC88B-210ENST00000494566 ERO1AQ96HE7 468 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms