RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 GABRQQ9UN88 632 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 FAM196BA6NMK8 535 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 USP17L10C9JJH3 530 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 EVI5O60447 810 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 HMGCRP04035 888 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 USP5P45974 858 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 BACE1P56817 501 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 TREML2Q5T2D2 321 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 MAPKAPK5Q8IW41 473 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 SOCS4Q8WXH5 440 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 SHISA4Q96DD7 197 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 DBNDD2Q9BQY9 259 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 UNC93B1Q9H1C4 597 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 ASCC2Q9H1I8 757 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-213ENST00000493475 CHMP4BQ9H444 224 aaKnown RBP14.11□□□□□ -0.15
COL6A3-213ENST00000493475 COLQQ9Y215 455 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-213ENST00000493475 FLT1P17948 1338 aa14.11□□□□□ -0.15
COL6A3-213ENST00000493475 CEP290O15078 2479 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 IDH1O75874 414 aaKnown RBP14.1□□□□□ -0.15
COL6A3-213ENST00000493475 GLRX3O76003 335 aaKnown RBP14.1□□□□□ -0.15
COL6A3-213ENST00000493475 ELNP15502 786 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 CYP7A1P22680 504 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 MTMR2Q13614 643 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 TTF1Q15361 905 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-213ENST00000493475 TTC6Q86TZ1 520 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 ANKLE1Q8NAG6 615 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 GPRC5AQ8NFJ5 357 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 ZNF384Q8TF68 577 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 DEFB118Q96PH6 123 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 FEZ1Q99689 392 aa14.1□□□□□ -0.15
COL6A3-213ENST00000493475 NOP58Q9Y2X3 529 aaKnown RBP14.1□□□□□ -0.15
COL6A3-213ENST00000493475 CYP2E1P05181 493 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-213ENST00000493475 MAPK4P31152 587 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 USP14P54578 494 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 NECAB2Q7Z6G3 386 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 CCDC84Q86UT8 332 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-213ENST00000493475 DCBLD2Q96PD2 775 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 NUDT12Q9BQG2 462 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 HMX1Q9NP08 348 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-213ENST00000493475 CABP5Q9NP86 173 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 MORF4L1Q9UBU8 362 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 MAST2Q6P0Q8 1798 aa14.09□□□□□ -0.15
COL6A3-213ENST00000493475 HMMRO75330 724 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 HOXA7P31268 230 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-213ENST00000493475 ZAP70P43403 619 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 FXR1P51114 621 aaKnown RBP eCLIP14.08□□□□□ -0.16
COL6A3-213ENST00000493475 CCNA1P78396 465 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L2Q6R6M4 530 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.08□□□□□ -0.16
COL6A3-213ENST00000493475 PAK6Q9NQU5 681 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-213ENST00000493475 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-213ENST00000493475 PALD1Q9ULE6 856 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 ZBTB21Q9ULJ3 1066 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 ZSWIM8A7E2V4 1837 aa14.08□□□□□ -0.16
COL6A3-213ENST00000493475 HERVK_113P62684 666 aa14.07□□□□□ -0.16
COL6A3-213ENST00000493475 METTL16Q86W50 562 aaKnown RBP14.07□□□□□ -0.16
COL6A3-213ENST00000493475 C1orf115Q9H7X2 142 aa14.07□□□□□ -0.16
COL6A3-213ENST00000493475 SERPINB13Q9UIV8 391 aa14.07□□□□□ -0.16
COL6A3-213ENST00000493475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-213ENST00000493475 RPTORQ8N122 1335 aa14.07□□□□□ -0.16
COL6A3-213ENST00000493475 A0A1W2PPC1 479 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 ZBTB7BO15156 539 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-213ENST00000493475 SLURP2P0DP57 97 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 UBE2Q1Q7Z7E8 422 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 AACSQ86V21 672 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 CLASRPQ8N2M8 674 aaKnown RBP14.06□□□□□ -0.16
COL6A3-213ENST00000493475 MAGEB6Q8N7X4 407 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 CCDC8Q9H0W5 538 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-213ENST00000493475 EHD4Q9H223 541 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 SAP30BPQ9UHR5 308 aaKnown RBP14.06□□□□□ -0.16
COL6A3-213ENST00000493475 DBNLQ9UJU6 430 aaKnown RBP14.06□□□□□ -0.16
COL6A3-213ENST00000493475 TNNQ9UQP3 1299 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 MGAMO43451 1857 aa14.06□□□□□ -0.16
COL6A3-213ENST00000493475 LOC285556D6RIA3 1793 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 GDF11O95390 407 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 XRCC5P13010 732 aaKnown RBP14.05□□□□□ -0.16
COL6A3-213ENST00000493475 ZKSCAN1P17029 563 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-213ENST00000493475 RGS2P41220 211 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 AMOTL1Q8IY63 956 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 CRNKL1Q9BZJ0 848 aaKnown RBP14.05□□□□□ -0.16
COL6A3-213ENST00000493475 NBPF3Q9H094 633 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 CRISPLD2Q9H0B8 497 aa14.05□□□□□ -0.16
COL6A3-213ENST00000493475 PIH1D3Q9NQM4 214 aaKnown RBP14.05□□□□□ -0.16
COL6A3-213ENST00000493475 PTPRFP10586 1907 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L15C9J2P7 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L13C9JLJ4 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L11C9JVI0 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L18D6R9N7 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L22D6RA61 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L17D6RBQ6 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L19D6RCP7 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L20D6RJB6 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 GH2P01242 217 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 POLR3DP05423 398 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-213ENST00000493475 USP17L24Q0WX57 530 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 RAB3GAP1Q15042 981 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 ABCB5Q2M3G0 1257 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 CERKLQ49MI3 558 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-213ENST00000493475 CEP85Q6P2H3 762 aa14.04□□□□□ -0.16
COL6A3-213ENST00000493475 MIGA1Q8NAN2 632 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms