RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 C22orf34Q6ZV56 151 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 RIN3Q8TB24 985 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 PLPPR2Q96GM1 343 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 ST14Q9Y5Y6 855 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 CAPN6Q9Y6Q1 641 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 ZSCAN22P10073 491 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-206ENST00000491429 MAPK1P28482 360 aa8.42□□□□□ -1.06
SCN1A-206ENST00000491429 NSUN3Q9H649 340 aaKnown RBP8.42□□□□□ -1.06
SCN1A-206ENST00000491429 CYP8B1Q9UNU6 501 aa8.42□□□□□ -1.06
SCN1A-206ENST00000491429 SCARA3Q6AZY7 606 aa8.41□□□□□ -1.06
SCN1A-206ENST00000491429 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-206ENST00000491429 SRCIN1Q9C0H9 1055 aa8.41□□□□□ -1.06
SCN1A-206ENST00000491429 CBX7O95931 251 aa8.4□□□□□ -1.06
SCN1A-206ENST00000491429 MAPK8P45983 427 aa8.4□□□□□ -1.06
SCN1A-206ENST00000491429 CDK8P49336 464 aa8.4□□□□□ -1.06
SCN1A-206ENST00000491429 FBXO15Q8NCQ5 510 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-206ENST00000491429 WNT10AQ9GZT5 417 aa8.4□□□□□ -1.06
SCN1A-206ENST00000491429 NFIBO00712 420 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 LETMD1Q6P1Q0 360 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 LILRA6Q6PI73 481 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 HDXQ7Z353 690 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 SIAH1Q8IUQ4 282 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 FBF1Q8TES7 1133 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 UBE2FQ969M7 185 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 GAL3ST3Q96A11 431 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 ALPK1Q96QP1 1244 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 SLAMF8Q9P0V8 285 aa8.39□□□□□ -1.07
SCN1A-206ENST00000491429 CAP2P40123 477 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 ETF1P62495 437 aaKnown RBP8.38□□□□□ -1.07
SCN1A-206ENST00000491429 THAP5Q7Z6K1 395 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 MFSD2AQ8NA29 543 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 ANKRD24Q8TF21 1146 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 XAGE3Q8WTP9 111 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 ZSWIM5Q9P217 1185 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 WWC3Q9ULE0 1092 aa8.38□□□□□ -1.07
SCN1A-206ENST00000491429 NPIPB6E9PJ23 425 aa8.37□□□□□ -1.07
SCN1A-206ENST00000491429 WIPI1Q5MNZ9 446 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-206ENST00000491429 PRAMEF13Q5VWM6 474 aa8.37□□□□□ -1.07
SCN1A-206ENST00000491429 DNAJC25-GNG10A0A024R161 153 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 ERVFC1P60507 584 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 FMR1Q06787 632 aaKnown RBP eCLIP8.36□□□□□ -1.07
SCN1A-206ENST00000491429 RALGPS1Q5JS13 557 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 TTC6Q86TZ1 520 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 HID1Q8IV36 788 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 ABHD4Q8TB40 342 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 ARID3AQ99856 593 aa8.36□□□□□ -1.07
SCN1A-206ENST00000491429 DCP1AQ9NPI6 582 aaPredicted RBP8.36□□□□□ -1.07
SCN1A-206ENST00000491429 USP17L7P0C7H9 530 aa8.35□□□□□ -1.07
SCN1A-206ENST00000491429 TNK2Q07912 1038 aa8.35□□□□□ -1.07
SCN1A-206ENST00000491429 EPB41L4BQ9H329 900 aa8.35□□□□□ -1.07
SCN1A-206ENST00000491429 CD320Q9NPF0 282 aa8.35□□□□□ -1.07
SCN1A-206ENST00000491429 GNEQ9Y223 722 aaKnown RBP8.35□□□□□ -1.07
SCN1A-206ENST00000491429 GIPC1O14908 333 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 CST3P01034 146 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-206ENST00000491429 TMEM253P0C7T8 217 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 GRK4P32298 578 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 TTLL10Q6ZVT0 673 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 CCDC120Q96HB5 630 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 C12orf49Q9H741 205 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 SNCAIPQ9Y6H5 919 aa8.34□□□□□ -1.07
SCN1A-206ENST00000491429 WASH4PA8MWX3 477 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 ESR1P03372 595 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 HK2P52789 917 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 KCNA10Q16322 511 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 ALG1LQ6GMV1 187 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 ZNF746Q6NUN9 644 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-206ENST00000491429 ATG14Q6ZNE5 492 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 C14orf37Q86TY3 774 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 CDH24Q86UP0 819 aa8.33□□□□□ -1.08
SCN1A-206ENST00000491429 ETV2O00321 342 aaPredicted RBP8.32□□□□□ -1.08
SCN1A-206ENST00000491429 RAC2P15153 192 aa8.32□□□□□ -1.08
SCN1A-206ENST00000491429 TTBK2Q6IQ55 1244 aa8.32□□□□□ -1.08
SCN1A-206ENST00000491429 AMIGO3Q86WK7 504 aa8.32□□□□□ -1.08
SCN1A-206ENST00000491429 DPH2Q9BQC3 489 aaPredicted RBP8.32□□□□□ -1.08
SCN1A-206ENST00000491429 FAM8A1Q9UBU6 413 aa8.32□□□□□ -1.08
SCN1A-206ENST00000491429 TMEM59LQ9UK28 342 aa8.32□□□□□ -1.08
SCN1A-206ENST00000491429 NCANO14594 1321 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 MED14OSP0DP75 135 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 KIR3DL1P43629 444 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 PDE4CQ08493 712 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 SV2BQ7L1I2 683 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 MYLIPQ8WY64 445 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 SPG7Q9UQ90 795 aa8.31□□□□□ -1.08
SCN1A-206ENST00000491429 PRRG2O14669 202 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 CYP7A1P22680 504 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 SEPT6Q14141 434 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 LCE5AQ5TCM9 118 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 KRTAP4-5Q9BYR2 181 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 ADAMTS10Q9H324 1103 aa8.3□□□□□ -1.08
SCN1A-206ENST00000491429 TTF2Q9UNY4 1162 aaKnown RBP8.3□□□□□ -1.08
SCN1A-206ENST00000491429 TCAF2A6NFQ2 919 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 B8ZZF3 427 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 GFRA2O00451 464 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 HPXP02790 462 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 TRHRP34981 398 aaPredicted RBP8.29□□□□□ -1.08
SCN1A-206ENST00000491429 TMPRSS7Q7RTY8 843 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 CREG2Q8IUH2 290 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 COX4I2Q96KJ9 171 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 TJP2Q9UDY2 1190 aa8.29□□□□□ -1.08
SCN1A-206ENST00000491429 SMG5Q9UPR3 1016 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms