RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 ZSCAN16Q9H4T2 348 aaPredicted RBP12□□□□□ -0.49
HDAC3-210ENST00000490808 GAKO14976 1311 aa12□□□□□ -0.49
HDAC3-210ENST00000490808 KLF18A0A0U1RQI7 1052 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 CCDC196A0A1B0GTZ2 297 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 RASSF10A6NK89 507 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 MINDY4BA8MYZ0 360 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 IFIT3O14879 490 aaKnown RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 NPM3O75607 178 aaKnown RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 MBD3O95983 291 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 F13A1P00488 732 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 PDIA3P30101 505 aaKnown RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 RCAN1P53805 252 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 HIRAP54198 1017 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 SBK1Q52WX2 424 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 TMEM67Q5HYA8 995 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 FAM83AQ86UY5 434 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 IQCA1Q86XH1 822 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 UBAC1Q9BSL1 405 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 LRRC2Q9BYS8 371 aa11.99□□□□□ -0.49
HDAC3-210ENST00000490808 EPB41L4AQ9HCS5 686 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 AATFQ9NY61 560 aaKnown RBP eCLIP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 ABT1Q9ULW3 272 aaKnown RBP11.99□□□□□ -0.49
HDAC3-210ENST00000490808 MROH7-TTC4A0A0A0MT08 1334 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 VPS37CA5D8V6 355 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-210ENST00000490808 UNCXA6NJT0 531 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 B4E1Z4 1266 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 F8W031 263 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-210ENST00000490808 PRKAB2O43741 272 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 NF2P35240 595 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 FKBP1BP68106 108 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 CTDSPL2Q05D32 466 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 SCRN1Q12765 414 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 WTAPQ15007 396 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 SPDYE2Q495Y8 402 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 KRT26Q7Z3Y9 468 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 SYAP1Q96A49 352 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-210ENST00000490808 BEGAINQ9BUH8 593 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 MXD3Q9BW11 206 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 GGA3Q9NZ52 723 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 TAOK2Q9UL54 1235 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 ISY1Q9ULR0 285 aaKnown RBP11.98□□□□□ -0.49
HDAC3-210ENST00000490808 JAG2Q9Y219 1238 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 ZDHHC9Q9Y397 364 aa11.98□□□□□ -0.49
HDAC3-210ENST00000490808 DDX49Q9Y6V7 483 aaKnown RBP11.98□□□□□ -0.49
HDAC3-210ENST00000490808 GPR75-ASB3A0A0A6YYF3 556 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 GOLGA8BA8MQT2 603 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SH2B2O14492 632 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-210ENST00000490808 ZBTB43O43298 467 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 KDM4AO75164 1064 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 CALM1P0DP23 149 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 CALM2P0DP24 149 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 CALM3P0DP25 149 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 METAP2P50579 478 aaKnown RBP eCLIP11.97□□□□□ -0.49
HDAC3-210ENST00000490808 DYNLL1P63167 89 aaKnown RBP11.97□□□□□ -0.49
HDAC3-210ENST00000490808 KLHL40Q2TBA0 621 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 NBPF9Q3BBW0 867 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SUPT20HL1Q3ZLR7 823 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 RRP12Q5JTH9 1297 aaKnown RBP11.97□□□□□ -0.49
HDAC3-210ENST00000490808 RBM26Q5T8P6 1007 aaKnown RBP11.97□□□□□ -0.49
HDAC3-210ENST00000490808 CHST3Q7LGC8 479 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 ADGRA1Q86SQ6 560 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SGMS1Q86VZ5 419 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 TBC1D10CQ8IV04 446 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SMARCC2Q8TAQ2 1214 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SDR42E1Q8WUS8 393 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 WASF1Q92558 559 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 DAGLAQ9Y4D2 1042 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 SLC12A7Q9Y666 1083 aa11.97□□□□□ -0.49
HDAC3-210ENST00000490808 FOCADQ5VW36 1801 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 ORC4O43929 436 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 ANTXR2P58335 489 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 CCT2P78371 535 aaKnown RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 KRT85P78386 507 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 PKP1Q13835 747 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 ANGEL2Q5VTE6 544 aaKnown RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 ATL3Q6DD88 541 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 APOBEC3HQ6NTF7 200 aaKnown RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 CTR9Q6PD62 1173 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 PAXIP1Q6ZW49 1069 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 IGDCC4Q8TDY8 1250 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 PRMT6Q96LA8 375 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 IDI2Q9BXS1 227 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 DCP1AQ9NPI6 582 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-210ENST00000490808 ZSWIM5Q9P217 1185 aa11.96□□□□□ -0.49
HDAC3-210ENST00000490808 COL2A1P02458 1487 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-210ENST00000490808 LAMB1P07942 1786 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 NEDD4P46934 1319 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 SHTN1A0MZ66 631 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 PTPDC1A2A3K4 754 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 USP17L12C9JPN9 530 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 USP17L21D6R901 530 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 ENTPD3O75355 529 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 PRPF40AO75400 957 aaKnown RBP11.95□□□□□ -0.5
HDAC3-210ENST00000490808 EGFRP00533 1210 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 POLR3DP05423 398 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-210ENST00000490808 FGRP09769 529 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 GRM1Q13255 1194 aa11.95□□□□□ -0.5
HDAC3-210ENST00000490808 FOXD4L5Q5VV16 416 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-210ENST00000490808 MAP1SQ66K74 1059 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-210ENST00000490808 CYB5R4Q7L1T6 521 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms