RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 CALM1P0DP23 149 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CALM2P0DP24 149 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CALM3P0DP25 149 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 DMPKQ09013 629 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 SLC26A6Q9BXS9 759 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 ATP6V0A4Q9HBG4 840 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 PALMDQ9NP74 551 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 TMOD4Q9NZQ9 345 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 ARIH1Q9Y4X5 557 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 NPHP3Q7Z494 1330 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 USP27XA6NNY8 438 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 PSMA7O14818 248 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 PARP1P09874 1014 aaKnown RBP8.02□□□□□ -1.12
SYNE1-228ENST00000490135 TSPY3P0CV98 308 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 TSPY8P0CW00 308 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 GPTP24298 496 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 SLC44A4Q53GD3 710 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 TAOK1Q7L7X3 1001 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 HS2ST1Q7LGA3 356 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 ARHGAP24Q8N264 748 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 ZKSCAN4Q969J2 545 aaPredicted RBP8.02□□□□□ -1.12
SYNE1-228ENST00000490135 USP26Q9BXU7 913 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 TRPC6Q9Y210 931 aa8.02□□□□□ -1.12
SYNE1-228ENST00000490135 BRD1O95696 1058 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 TNNC1P63316 161 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ARID5AQ03989 594 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 PLCB4Q15147 1175 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ZNF280DQ6N043 979 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 IQUBQ8NA54 791 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 SLC40A1Q9NP59 571 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 E2F6O75461 281 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ZRANB2O95218 330 aaKnown RBP eCLIP8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ASIC1P78348 528 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 PPARDQ03181 441 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 HIBCHQ6NVY1 386 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-228ENST00000490135 CCDC62Q6P9F0 684 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 SPATA17Q96L03 361 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 TSGA10Q9BZW7 698 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 PPP2R2CQ9Y2T4 447 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 KRT86O43790 486 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 GIGYF1O75420 1035 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ECEL1O95672 775 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 GNAT2P19087 354 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 MCM7P33993 719 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 DRP2Q13474 957 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 APLFQ8IW19 511 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-228ENST00000490135 MCUR1Q96AQ8 359 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 BCAP29Q9UHQ4 241 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 ESYT2A0FGR8 921 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 LSM1O15116 133 aaKnown RBP8.02□□□□□ -1.13
SYNE1-228ENST00000490135 KRT3P12035 628 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 MLH1P40692 756 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 CC2D2BQ6DHV5 1058 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 CHAMP1Q96JM3 812 aa8.02□□□□□ -1.13
SYNE1-228ENST00000490135 MEFVO15553 781 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 PTCD1O75127 700 aaKnown RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 RBM6P78332 1123 aaKnown RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 PREPLQ4J6C6 727 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 BRDTQ58F21 947 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 WDR44Q5JSH3 913 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 TMEM132EQ6IEE7 984 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 OGFOD1Q8N543 542 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 KIFAP3Q92845 792 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 SLC4A8Q2Y0W8 1093 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 TMEM110Q86TL2 294 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 UBLCP1Q8WVY7 318 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 LRRC9Q6ZRR7 1453 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 LRRIQ3A6PVS8 624 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 GNAT3A8MTJ3 354 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 AHCYL1O43865 530 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 SUPT3HO75486 399 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 MYBL2P10244 700 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 ZNF131P52739 623 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 RUFY3Q7L099 469 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 THEMISQ8N1K5 641 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 LEO1Q8WVC0 666 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-228ENST00000490135 SPDYE3A6NKU9 549 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 TXNDC9O14530 226 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 ARHGAP6O43182 974 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 VPS41P49754 854 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 HEATR3Q7Z4Q2 680 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 MICU3Q86XE3 530 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 TEKT4Q8WW24 435 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 GUCA1BQ9UMX6 200 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 STX8Q9UNK0 236 aa8.01□□□□□ -1.13
SYNE1-228ENST00000490135 ANKRD30BQ9BXX2 1392 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 RNF8O76064 485 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 KRT5P13647 590 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 AFMP43652 599 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 SF3A3Q12874 501 aaKnown RBP eCLIP8□□□□□ -1.13
SYNE1-228ENST00000490135 PPP2R5DQ14738 602 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 SEPT2Q15019 361 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 OLFML2BQ68BL8 750 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 FOXR1Q6PIV2 292 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 IGSF22Q8N9C0 903 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 NCOA7Q8NI08 942 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 ARHGEF2Q92974 986 aaKnown RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 GORASP1Q9BQQ3 440 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 NUB1Q9Y5A7 615 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms