RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ST13P50502 369 aaKnown RBP5.82□□□□□ -1.48
CPSF3-205ENST00000489629 ETF1P62495 437 aaKnown RBP5.82□□□□□ -1.48
CPSF3-205ENST00000489629 MAP3K11Q16584 847 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 TMC4Q7Z404 712 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 MIPEPQ99797 713 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 NOC4LQ9BVI4 516 aaKnown RBP5.82□□□□□ -1.48
CPSF3-205ENST00000489629 PSMD2Q13200 908 aa5.81□□□□□ -1.48
CPSF3-205ENST00000489629 TAF1CQ15572 869 aaPredicted RBP5.81□□□□□ -1.48
CPSF3-205ENST00000489629 SFRP5Q5T4F7 317 aa5.81□□□□□ -1.48
CPSF3-205ENST00000489629 PRAMEF13Q5VWM6 474 aa5.81□□□□□ -1.48
CPSF3-205ENST00000489629 PRDM7Q9NQW5 492 aa5.81□□□□□ -1.48
CPSF3-205ENST00000489629 TJP2Q9UDY2 1190 aa5.81□□□□□ -1.48
CPSF3-205ENST00000489629 RLBP1P12271 317 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 ZP2Q05996 745 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 IKZF1Q13422 519 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 LETMD1Q6P1Q0 360 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 MRPL41Q8IXM3 137 aaKnown RBP5.8□□□□□ -1.48
CPSF3-205ENST00000489629 FLAD1Q8NFF5 587 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 HSPA12BQ96MM6 686 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 MIR1-1HGQ9H1L0 117 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 LMCD1Q9NZU5 365 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 TPX2Q9ULW0 747 aaKnown RBP5.8□□□□□ -1.48
CPSF3-205ENST00000489629 TLR6Q9Y2C9 796 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 ST14Q9Y5Y6 855 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 CAPN6Q9Y6Q1 641 aa5.8□□□□□ -1.48
CPSF3-205ENST00000489629 LMNB1P20700 586 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 TAGLNQ01995 201 aaKnown RBP5.79□□□□□ -1.48
CPSF3-205ENST00000489629 RPL6Q02878 288 aaKnown RBP5.79□□□□□ -1.48
CPSF3-205ENST00000489629 TSNAXIP1Q2TAA8 658 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 MFSD4AQ8N468 514 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 PHC3Q8NDX5 983 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 FAM168AQ92567 244 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 FAM161BQ96MY7 647 aa5.79□□□□□ -1.48
CPSF3-205ENST00000489629 BTBD11A6QL63 1104 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 PGRP06401 933 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 C8AP07357 584 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 XPCQ01831 940 aaPredicted RBP5.78□□□□□ -1.48
CPSF3-205ENST00000489629 SLC6A19Q695T7 634 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 ZNF746Q6NUN9 644 aaPredicted RBP5.78□□□□□ -1.48
CPSF3-205ENST00000489629 CCDC84Q86UT8 332 aaPredicted RBP5.78□□□□□ -1.48
CPSF3-205ENST00000489629 MCATQ8IVS2 390 aaKnown RBP5.78□□□□□ -1.48
CPSF3-205ENST00000489629 XAGE3Q8WTP9 111 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 TMEM40Q8WWA1 233 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 ACSF2Q96CM8 615 aaPredicted RBP5.78□□□□□ -1.48
CPSF3-205ENST00000489629 TMEM87BQ96K49 555 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 ATP13A1Q9HD20 1204 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 CTNND2Q9UQB3 1225 aa5.78□□□□□ -1.48
CPSF3-205ENST00000489629 FAM155AB1AL88 458 aaPredicted RBP5.77□□□□□ -1.49
CPSF3-205ENST00000489629 CDKAL1Q5VV42 579 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 THAP5Q7Z6K1 395 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 CDH24Q86UP0 819 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 DNAJB8Q8NHS0 232 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 JARID2Q92833 1246 aaPredicted RBP5.77□□□□□ -1.49
CPSF3-205ENST00000489629 COX4I2Q96KJ9 171 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 DPH2Q9BQC3 489 aaPredicted RBP5.77□□□□□ -1.49
CPSF3-205ENST00000489629 ADAM30Q9UKF2 790 aa5.77□□□□□ -1.49
CPSF3-205ENST00000489629 FAM221AA4D161 298 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 H3BS24 57 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 CILPO75339 1184 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 CBX7O95931 251 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 KIR3DL1P43629 444 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 LMNB2Q03252 620 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 PDE4BQ07343 736 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 TNK2Q07912 1038 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 BNC2Q6ZN30 1099 aaPredicted RBP5.76□□□□□ -1.49
CPSF3-205ENST00000489629 PPP1R13LQ8WUF5 828 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 CRELD1Q96HD1 420 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 RHOVQ96L33 236 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 CARS2Q9HA77 564 aaKnown RBP5.76□□□□□ -1.49
CPSF3-205ENST00000489629 C19orf73Q9NVV2 129 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 CORINQ9Y5Q5 1042 aa5.76□□□□□ -1.49
CPSF3-205ENST00000489629 SORBS3O60504 671 aa5.75□□□□□ -1.49
CPSF3-205ENST00000489629 CYP7A1P22680 504 aa5.75□□□□□ -1.49
CPSF3-205ENST00000489629 CAMK2GQ13555 558 aaPredicted RBP5.75□□□□□ -1.49
CPSF3-205ENST00000489629 Q96M66 194 aa5.75□□□□□ -1.49
CPSF3-205ENST00000489629 RSRP1Q9BUV0 290 aa5.75□□□□□ -1.49
CPSF3-205ENST00000489629 ZNF503-AS2A6NEH8 195 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.74□□□□□ -1.49
CPSF3-205ENST00000489629 F6X3S4 739 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 F13A1P00488 732 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 PF4P02776 101 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 ERCC3P19447 782 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 JAG1P78504 1218 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 FZD5Q13467 585 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 TMEM201Q5SNT2 666 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 ZNF648Q5T619 568 aaPredicted RBP5.74□□□□□ -1.49
CPSF3-205ENST00000489629 FYB2Q5VWT5 728 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 ZSWIM9Q86XI8 627 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 GATAD2BQ8WXI9 593 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 UBE2FQ969M7 185 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.74□□□□□ -1.49
CPSF3-205ENST00000489629 CEP131Q9UPN4 1083 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 PRR36Q9H6K5 1346 aa5.74□□□□□ -1.49
CPSF3-205ENST00000489629 KRTAP4-8A0A0G2JLE6 195 aa5.73□□□□□ -1.49
CPSF3-205ENST00000489629 UPK3BL1B0FP48 263 aa5.73□□□□□ -1.49
CPSF3-205ENST00000489629 UPK3BL2E5RIL1 263 aa5.73□□□□□ -1.49
CPSF3-205ENST00000489629 ESR1P03372 595 aa5.73□□□□□ -1.49
CPSF3-205ENST00000489629 ETV3P41162 512 aa5.73□□□□□ -1.49
CPSF3-205ENST00000489629 PIWIL2Q8TC59 973 aaKnown RBP5.73□□□□□ -1.49
CPSF3-205ENST00000489629 TMEM74Q96NL1 305 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms