RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 BACE1P56817 501 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 DYNLL1P63167 89 aaKnown RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 FOXP4Q8IVH2 680 aaPredicted RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 CRACR2BQ8N4Y2 399 aaPredicted RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 EAF2Q96CJ1 260 aaPredicted RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 CRISPLD2Q9H0B8 497 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 RBM27Q9P2N5 1060 aaKnown RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 MORF4L1Q9UBU8 362 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 SAP30BPQ9UHR5 308 aaKnown RBP15.17■□□□□ 0.02
CPSF3-204ENST00000489403 GJD2Q9UKL4 321 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 ALPK3Q96L96 1907 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 HOXA7P31268 230 aaPredicted RBP15.16■□□□□ 0.02
CPSF3-204ENST00000489403 IRX3P78415 501 aaPredicted RBP15.16■□□□□ 0.02
CPSF3-204ENST00000489403 HNRNPUQ00839 825 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF3-204ENST00000489403 TRIM34Q9BYJ4 488 aa15.16■□□□□ 0.02
CPSF3-204ENST00000489403 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF3-204ENST00000489403 TMOD4Q9NZQ9 345 aa15.16■□□□□ 0.02
CPSF3-204ENST00000489403 ZBTB21Q9ULJ3 1066 aa15.16■□□□□ 0.02
CPSF3-204ENST00000489403 SZT2Q5T011 3432 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 C19orf81C9J6K1 198 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 USP17L10C9JJH3 530 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 PEX10O60683 326 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 HMGCRP04035 888 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 HLA-DOAP06340 250 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 CAPN2P17655 700 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 CYP7A1P22680 504 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 TRIM32Q13049 653 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 CEP85Q6P2H3 762 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 P2RX7Q99572 595 aaKnown RBP15.15■□□□□ 0.02
CPSF3-204ENST00000489403 PRO3102Q9H379 93 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 TXNRD2Q9NNW7 524 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 GINM1Q9NU53 330 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 NR2E3Q9Y5X4 410 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 NDUFB9Q9Y6M9 179 aa15.15■□□□□ 0.02
CPSF3-204ENST00000489403 IDH1O75874 414 aaKnown RBP15.14■□□□□ 0.01
CPSF3-204ENST00000489403 HERVK_113P62684 666 aa15.14■□□□□ 0.01
CPSF3-204ENST00000489403 MIGA1Q8NAN2 632 aa15.14■□□□□ 0.01
CPSF3-204ENST00000489403 DIS3LQ8TF46 1054 aaKnown RBP15.14■□□□□ 0.01
CPSF3-204ENST00000489403 ANTXR1Q9H6X2 564 aa15.14■□□□□ 0.01
CPSF3-204ENST00000489403 DDX60LQ5H9U9 1706 aaKnown RBP15.14■□□□□ 0.01
CPSF3-204ENST00000489403 CEP290O15078 2479 aa15.13■□□□□ 0.01
CPSF3-204ENST00000489403 MAGEB6Q8N7X4 407 aa15.13■□□□□ 0.01
CPSF3-204ENST00000489403 TRIB2Q92519 343 aa15.13■□□□□ 0.01
CPSF3-204ENST00000489403 PAWRQ96IZ0 340 aaKnown RBP15.13■□□□□ 0.01
CPSF3-204ENST00000489403 EXOC6BQ9Y2D4 811 aa15.13■□□□□ 0.01
CPSF3-204ENST00000489403 RANBP2P49792 3224 aaKnown RBP15.13■□□□□ 0.01
CPSF3-204ENST00000489403 EVI5O60447 810 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 GH2P01242 217 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 CYP2B6P20813 491 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 USP5P45974 858 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 Q3C1V9 767 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 TATDN1Q6P1N9 297 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 GPRC5AQ8NFJ5 357 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 HMX1Q9NP08 348 aaPredicted RBP15.12■□□□□ 0.01
CPSF3-204ENST00000489403 EMILIN3Q9NT22 766 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 RBPJLQ9UBG7 517 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 TRIOBPQ9H2D6 2365 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 RPTORQ8N122 1335 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 NAV1Q8NEY1 1877 aa15.12■□□□□ 0.01
CPSF3-204ENST00000489403 ERVK-9P63128 1117 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 ERVK-24P63145 666 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 USP17L2Q6R6M4 530 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 POTEEQ6S8J3 1075 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 NECAB2Q7Z6G3 386 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 AACSQ86V21 672 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 CERS3Q8IU89 383 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 ANKLE1Q8NAG6 615 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 SOCS4Q8WXH5 440 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 NUDT12Q9BQG2 462 aa15.11■□□□□ 0.01
CPSF3-204ENST00000489403 MNX1P50219 401 aaPredicted RBP15.1■□□□□ 0.01
CPSF3-204ENST00000489403 MAP3K12Q12852 859 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 ZYXQ15942 572 aaKnown RBP15.1■□□□□ 0.01
CPSF3-204ENST00000489403 MAP3K21Q5TCX8 1036 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 ERC1Q8IUD2 1116 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 MIER1Q8N108 512 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 GTF3C2Q8WUA4 911 aaPredicted RBP15.1■□□□□ 0.01
CPSF3-204ENST00000489403 C12orf42Q96LP6 360 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 PAGR1Q9BTK6 254 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 EHD4Q9H223 541 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 PORCNQ9H237 461 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 SERPINB13Q9UIV8 391 aa15.1■□□□□ 0.01
CPSF3-204ENST00000489403 XRCC5P13010 732 aaKnown RBP15.09■□□□□ 0.01
CPSF3-204ENST00000489403 MAPK4P31152 587 aa15.09■□□□□ 0.01
CPSF3-204ENST00000489403 GPR142Q7Z601 462 aa15.09■□□□□ 0.01
CPSF3-204ENST00000489403 PANK1Q8TE04 598 aa15.09■□□□□ 0.01
CPSF3-204ENST00000489403 FEZ1Q99689 392 aa15.09■□□□□ 0.01
CPSF3-204ENST00000489403 RIOK1Q9BRS2 568 aaKnown RBP15.09■□□□□ 0.01
CPSF3-204ENST00000489403 IL1RAPL2Q9NP60 686 aa15.09■□□□□ 0.01
CPSF3-204ENST00000489403 CNMDO75829 334 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 PRKAR2AP13861 404 aaKnown RBP15.08■□□□□ 0
CPSF3-204ENST00000489403 PLCD1P51178 756 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 PDE3AQ14432 1141 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 RAB3GAP1Q15042 981 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 CERKLQ49MI3 558 aaPredicted RBP15.08■□□□□ 0
CPSF3-204ENST00000489403 TMED8Q6PL24 325 aaPredicted RBP15.08■□□□□ 0
CPSF3-204ENST00000489403 TTC6Q86TZ1 520 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 RHPN1Q8TCX5 695 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 USP6NLQ92738 828 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 OGDHLQ9ULD0 1010 aa15.08■□□□□ 0
CPSF3-204ENST00000489403 A0A1W2PPC1 479 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms