RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 TBC1D2Q9BYX2 928 aa25.54■■□□□ 1.68
LIME1-207ENST00000489212 ZBTB21Q9ULJ3 1066 aa25.54■■□□□ 1.68
LIME1-207ENST00000489212 CYP2D6P10635 497 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 TREML2Q5T2D2 321 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 PARK7Q99497 189 aaKnown RBP25.53■■□□□ 1.68
LIME1-207ENST00000489212 WDR18Q9BV38 432 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 ARHGAP39Q9C0H5 1083 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 EFCC1Q9HA90 598 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 LOC285556D6RIA3 1793 aa25.53■■□□□ 1.68
LIME1-207ENST00000489212 BAZ2AQ9UIF9 1905 aaKnown RBP25.53■■□□□ 1.68
LIME1-207ENST00000489212 MX1P20591 662 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 SHMT1P34896 483 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 HMGCS2P54868 508 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 GABPAQ06546 454 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 GINM1Q9NU53 330 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 AGTPBP1Q9UPW5 1226 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 SLC45A1Q9Y2W3 748 aa25.52■■□□□ 1.68
LIME1-207ENST00000489212 ERC2O15083 957 aa25.51■■□□□ 1.67
LIME1-207ENST00000489212 GLRX3O76003 335 aaKnown RBP25.51■■□□□ 1.67
LIME1-207ENST00000489212 GH2P01242 217 aa25.51■■□□□ 1.67
LIME1-207ENST00000489212 PROCA1Q8NCQ7 364 aaPredicted RBP25.51■■□□□ 1.67
LIME1-207ENST00000489212 AS3MTQ9HBK9 375 aa25.51■■□□□ 1.67
LIME1-207ENST00000489212 IGHDP01880 384 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 CENPFP49454 3210 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 LACTBP83111 547 aaPredicted RBP25.5■■□□□ 1.67
LIME1-207ENST00000489212 SH3D19Q5HYK7 790 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 OSBP2Q969R2 916 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 ATP8A2Q9NTI2 1148 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 PTPN22Q9Y2R2 807 aa25.5■■□□□ 1.67
LIME1-207ENST00000489212 SMIM22K7EJ46 135 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 RNF113AO15541 343 aaKnown RBP25.49■■□□□ 1.67
LIME1-207ENST00000489212 BCRP11274 1271 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 CTGFP29279 349 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 BACE1P56817 501 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 MTMR2Q13614 643 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 CERKLQ49MI3 558 aaPredicted RBP25.49■■□□□ 1.67
LIME1-207ENST00000489212 SLC4A4Q9Y6R1 1079 aa25.49■■□□□ 1.67
LIME1-207ENST00000489212 SMC5Q8IY18 1101 aa25.48■■□□□ 1.67
LIME1-207ENST00000489212 STRBPQ96SI9 672 aaKnown RBP25.48■■□□□ 1.67
LIME1-207ENST00000489212 RWDD1Q9H446 243 aaPredicted RBP25.48■■□□□ 1.67
LIME1-207ENST00000489212 ZBTB47Q9UFB7 747 aaPredicted RBP25.48■■□□□ 1.67
LIME1-207ENST00000489212 CYP2D7A0A087X1C5 515 aa25.47■■□□□ 1.67
LIME1-207ENST00000489212 ECM2O94769 699 aaPredicted RBP25.47■■□□□ 1.67
LIME1-207ENST00000489212 SLC44A5Q8NCS7 719 aa25.47■■□□□ 1.67
LIME1-207ENST00000489212 APPBP2Q92624 585 aa25.47■■□□□ 1.67
LIME1-207ENST00000489212 DYNLL2Q96FJ2 89 aa25.47■■□□□ 1.67
LIME1-207ENST00000489212 STAP2Q9UGK3 403 aa25.47■■□□□ 1.67
LIME1-207ENST00000489212 ABCB5Q2M3G0 1257 aa25.46■■□□□ 1.67
LIME1-207ENST00000489212 USP17L10C9JJH3 530 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 USP17L12C9JPN9 530 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 USP17L21D6R901 530 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 ZFYP08048 801 aaPredicted RBP25.45■■□□□ 1.66
LIME1-207ENST00000489212 GUCY1A2P33402 732 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 PDE1AP54750 535 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 KIF22Q14807 665 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 C12orf60Q5U649 245 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 LNPKQ9C0E8 428 aa25.45■■□□□ 1.66
LIME1-207ENST00000489212 M0R2C6 588 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 SOX10P56693 466 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 RAB3GAP1Q15042 981 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 ARHGEF6Q15052 776 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 B4GALNT3Q6L9W6 998 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 TRIM47Q96LD4 638 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 FSD1Q9BTV5 496 aa25.44■■□□□ 1.66
LIME1-207ENST00000489212 GSG1L2A8MUP6 293 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 C19orf81C9J6K1 198 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 PSMC4P43686 418 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 IRX6P78412 446 aaPredicted RBP25.43■■□□□ 1.66
LIME1-207ENST00000489212 CTR9Q6PD62 1173 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 SMCR8Q8TEV9 937 aaPredicted RBP25.43■■□□□ 1.66
LIME1-207ENST00000489212 ASCC2Q9H1I8 757 aaPredicted RBP25.43■■□□□ 1.66
LIME1-207ENST00000489212 EMILIN3Q9NT22 766 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 TMOD4Q9NZQ9 345 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 PNMA3Q9UL41 463 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 PTCH2Q9Y6C5 1203 aa25.43■■□□□ 1.66
LIME1-207ENST00000489212 GPAA1O43292 621 aa25.42■■□□□ 1.66
LIME1-207ENST00000489212 RGS19P49795 217 aa25.42■■□□□ 1.66
LIME1-207ENST00000489212 ACER1Q8TDN7 264 aa25.42■■□□□ 1.66
LIME1-207ENST00000489212 SEC62Q99442 399 aaKnown RBP25.42■■□□□ 1.66
LIME1-207ENST00000489212 CABP5Q9NP86 173 aa25.42■■□□□ 1.66
LIME1-207ENST00000489212 SWAP70Q9UH65 585 aa25.42■■□□□ 1.66
LIME1-207ENST00000489212 MYH8P13535 1937 aa25.41■■□□□ 1.66
LIME1-207ENST00000489212 MGAMO43451 1857 aa25.41■■□□□ 1.66
LIME1-207ENST00000489212 PABPC4Q13310 644 aaKnown RBP eCLIP25.41■■□□□ 1.66
LIME1-207ENST00000489212 SEPT2Q15019 361 aa25.41■■□□□ 1.66
LIME1-207ENST00000489212 DDRGK1Q96HY6 314 aa25.41■■□□□ 1.66
LIME1-207ENST00000489212 OSBPP22059 807 aa25.4■■□□□ 1.66
LIME1-207ENST00000489212 HOXA7P31268 230 aaPredicted RBP25.4■■□□□ 1.66
LIME1-207ENST00000489212 CDK8P49336 464 aa25.4■■□□□ 1.66
LIME1-207ENST00000489212 NUCB1Q02818 461 aa25.4■■□□□ 1.66
LIME1-207ENST00000489212 LRRFIP1Q32MZ4 808 aaKnown RBP25.4■■□□□ 1.66
LIME1-207ENST00000489212 USP17L2Q6R6M4 530 aa25.4■■□□□ 1.66
LIME1-207ENST00000489212 ANKRD13CQ8N6S4 541 aa25.4■■□□□ 1.66
LIME1-207ENST00000489212 EPB41L4AQ9HCS5 686 aaPredicted RBP25.4■■□□□ 1.66
LIME1-207ENST00000489212 MPHOSPH10O00566 681 aaKnown RBP25.39■■□□□ 1.66
LIME1-207ENST00000489212 FMNL1O95466 1100 aaPredicted RBP25.39■■□□□ 1.66
LIME1-207ENST00000489212 GNRH1P01148 92 aa25.39■■□□□ 1.66
LIME1-207ENST00000489212 AKR1B1P15121 316 aa25.39■■□□□ 1.66
LIME1-207ENST00000489212 ZYXQ15942 572 aaKnown RBP25.39■■□□□ 1.66
LIME1-207ENST00000489212 ZMYM1Q5SVZ6 1142 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms