RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 USP50Q70EL3 339 aaPredicted RBP12.58□□□□□ -0.4
USP11-209ENST00000488848 ENAHQ8N8S7 591 aaPredicted RBP12.58□□□□□ -0.4
USP11-209ENST00000488848 BRF1Q92994 677 aa12.58□□□□□ -0.4
USP11-209ENST00000488848 LLPHQ9BRT6 129 aaKnown RBP12.58□□□□□ -0.4
USP11-209ENST00000488848 SAP30BPQ9UHR5 308 aaKnown RBP12.58□□□□□ -0.4
USP11-209ENST00000488848 CIZ1Q9ULV3 898 aaPredicted RBP12.58□□□□□ -0.4
USP11-209ENST00000488848 TNKSO95271 1327 aa12.58□□□□□ -0.4
USP11-209ENST00000488848 IQCA1LA6NCM1 817 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 DDNO94850 711 aaPredicted RBP12.57□□□□□ -0.4
USP11-209ENST00000488848 PDIA4P13667 645 aaKnown RBP12.57□□□□□ -0.4
USP11-209ENST00000488848 LMOD1P29536 600 aaPredicted RBP12.57□□□□□ -0.4
USP11-209ENST00000488848 HIRAP54198 1017 aaPredicted RBP12.57□□□□□ -0.4
USP11-209ENST00000488848 CACNB3P54284 484 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 APOA5Q6Q788 366 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 SAMD7Q7Z3H4 446 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 TRPM4Q8TD43 1214 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 HOOK2Q96ED9 719 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 DYNLL2Q96FJ2 89 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 UBAC1Q9BSL1 405 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP11-209ENST00000488848 CWC22Q9HCG8 908 aaKnown RBP12.57□□□□□ -0.4
USP11-209ENST00000488848 INCENPQ9NQS7 918 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 HPS5Q9UPZ3 1129 aa12.57□□□□□ -0.4
USP11-209ENST00000488848 CLRN2A0PK11 232 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 DDAH1O94760 285 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 LARGE1O95461 756 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 PDIA3P30101 505 aaKnown RBP12.56□□□□□ -0.4
USP11-209ENST00000488848 EPS15P42566 896 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 TMEM67Q5HYA8 995 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 SLC44A5Q8NCS7 719 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 SMARCC2Q8TAQ2 1214 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 TCEANC2Q96MN5 208 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 CSRNP1Q96S65 589 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 MKNK2Q9HBH9 465 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 IL17RBQ9NRM6 502 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 HACL1Q9UJ83 578 aa12.56□□□□□ -0.4
USP11-209ENST00000488848 ERICH2A1L162 156 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 TSPY2A6NKD2 308 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 IFIT3O14879 490 aaKnown RBP12.55□□□□□ -0.4
USP11-209ENST00000488848 RANBP6O60518 1105 aaKnown RBP12.55□□□□□ -0.4
USP11-209ENST00000488848 PRDM1O75626 825 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 TFAP4Q01664 338 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 TROAPQ12815 778 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 RASA3Q14644 834 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 WTAPQ15007 396 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 TBC1D10BQ4KMP7 808 aaPredicted RBP12.55□□□□□ -0.4
USP11-209ENST00000488848 ZNF444Q8N0Y2 327 aaPredicted RBP12.55□□□□□ -0.4
USP11-209ENST00000488848 MKL1Q969V6 931 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 BRPF3Q9ULD4 1205 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.55□□□□□ -0.4
USP11-209ENST00000488848 SSC5DA1L4H1 1573 aa12.55□□□□□ -0.4
USP11-209ENST00000488848 POTECB2RU33 542 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 TCP10L2B9ZVM9 353 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 DHX16O60231 1041 aaKnown RBP12.54□□□□□ -0.4
USP11-209ENST00000488848 TSPY3P0CV98 308 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 TSPY8P0CW00 308 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 CALM1P0DP23 149 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 CALM2P0DP24 149 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 CALM3P0DP25 149 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 APOBRQ0VD83 1088 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 TCP10Q12799 353 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 TMEM179Q6ZVK1 233 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 LRRC2Q9BYS8 371 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 TMEM39BQ9GZU3 492 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 DEFB129Q9H1M3 183 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 VEZTQ9HBM0 779 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
USP11-209ENST00000488848 MTMR4Q9NYA4 1195 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 ZNF112Q9UJU3 913 aa12.54□□□□□ -0.4
USP11-209ENST00000488848 ATAD5Q96QE3 1844 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 DOCK1Q14185 1865 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 POLR2AP24928 1970 aaKnown RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 KLF18A0A0U1RQI7 1052 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 PHF20L1A8MW92 1017 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 SNHG28P0DPA3 235 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 AKR1B1P15121 316 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 FGD1P98174 961 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 SCRN1Q12765 414 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 NTRK3Q16288 839 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 RRP12Q5JTH9 1297 aaKnown RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 IFIT1BQ5T764 474 aaKnown RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 ANGEL2Q5VTE6 544 aaKnown RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 CHST3Q7LGC8 479 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 PNMA8AQ86V59 439 aaPredicted RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 ZNF654Q8IZM8 581 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 TAF1DQ9H5J8 278 aaPredicted RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 FAM217BQ9NTX9 383 aaPredicted RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 GGA3Q9NZ52 723 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 NYAP2Q9P242 653 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 DAXXQ9UER7 740 aaPredicted RBP12.53□□□□□ -0.4
USP11-209ENST00000488848 SLC12A7Q9Y666 1083 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 STK36Q9NRP7 1315 aa12.53□□□□□ -0.4
USP11-209ENST00000488848 MYH4Q9Y623 1939 aa12.52□□□□□ -0.4
USP11-209ENST00000488848 CCDC196A0A1B0GTZ2 297 aa12.52□□□□□ -0.41
USP11-209ENST00000488848 GOLGA8BA8MQT2 603 aa12.52□□□□□ -0.41
USP11-209ENST00000488848 ZBTB43O43298 467 aa12.52□□□□□ -0.41
USP11-209ENST00000488848 TOP1P11387 765 aaKnown RBP12.52□□□□□ -0.41
USP11-209ENST00000488848 SMARCA1P28370 1054 aa12.52□□□□□ -0.41
USP11-209ENST00000488848 EPHX2P34913 555 aa12.52□□□□□ -0.41
USP11-209ENST00000488848 HMGN5P82970 282 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms