RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RSBN1LQ6PCB5 846 aaPredicted RBP14.18□□□□□ -0.14
HDAC6-230ENST00000488543 HHIPL2Q6UWX4 724 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 ARHGAP27Q6ZUM4 889 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 ZKSCAN3Q9BRR0 538 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 FAM217BQ9NTX9 383 aaPredicted RBP14.18□□□□□ -0.14
HDAC6-230ENST00000488543 FER1L6Q2WGJ9 1857 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 FIBPO43427 364 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 RXRAP19793 462 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 CDC27P30260 824 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 FKBP1AP62942 108 aaKnown RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 SEC23AQ15436 765 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 FAM173BQ6P4H8 233 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 DYNLL2Q96FJ2 89 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 VPS33BQ9H267 617 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 DDX4Q9NQI0 724 aaKnown RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 ARPP21Q9UBL0 812 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 R3HCC1Q9Y3T6 440 aaKnown RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 SHTN1A0MZ66 631 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 ZBTB43O43298 467 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 DHX16O60231 1041 aaKnown RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 WDHD1O75717 1129 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 MBD3O95983 291 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 PCP11498 1178 aaKnown RBP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 METAP2P50579 478 aaKnown RBP eCLIP14.17□□□□□ -0.14
HDAC6-230ENST00000488543 NFIAQ12857 509 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 ESR2Q92731 530 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 MYL10Q9BUA6 226 aa14.17□□□□□ -0.14
HDAC6-230ENST00000488543 FLT1P17948 1338 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ORC4O43929 436 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ADD1P35611 737 aaKnown RBP14.16□□□□□ -0.14
HDAC6-230ENST00000488543 FOSBP53539 338 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 NFXL1Q6ZNB6 911 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 MICU3Q86XE3 530 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 PRMT6Q96LA8 375 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ZDHHC15Q96MV8 337 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 GMLQ99445 158 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 TSPY26PQ9H489 355 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 H3BQV1 296 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 RBM10P98175 930 aaKnown RBP14.16□□□□□ -0.14
HDAC6-230ENST00000488543 WTAPQ15007 396 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 NTRK3Q16288 839 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 IFFO2Q5TF58 517 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 C12orf60Q5U649 245 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ZFPM1Q8IX07 1006 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ZNF830Q96NB3 372 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-230ENST00000488543 ORC3Q9UBD5 711 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-230ENST00000488543 KIF3AQ9Y496 699 aa14.16□□□□□ -0.14
HDAC6-230ENST00000488543 GOLGA8AA7E2F4 631 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 SLURP2P0DP57 97 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 PLCG2P16885 1265 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 HSP90AA2PQ14568 343 aaPredicted RBP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 CFAP100Q494V2 611 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 SLC44A5Q8NCS7 719 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 TDRD3Q9H7E2 651 aaKnown RBP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 SLC12A7Q9Y666 1083 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 MYH1P12882 1939 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 ROBO3Q96MS0 1386 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 TNKSO95271 1327 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 CCDC69A6NI79 296 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 CPLX1O14810 134 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 POLR3DP05423 398 aaPredicted RBP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 YBX3P16989 372 aaKnown RBP eCLIP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 SART3Q15020 963 aaKnown RBP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 CCDC144CPQ8IYA2 1237 aa14.15□□□□□ -0.14
HDAC6-230ENST00000488543 NOL7Q9UMY1 257 aaKnown RBP14.15□□□□□ -0.14
HDAC6-230ENST00000488543 OFD1O75665 1012 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 TCP10Q12799 353 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 CIAPIN1Q6FI81 312 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 UBE2Q2Q8WVN8 375 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 MRIQ9BWK5 157 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 SERPINA10Q9UK55 444 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 RANBP6O60518 1105 aaKnown RBP14.14□□□□□ -0.15
HDAC6-230ENST00000488543 FAM47AQ5JRC9 791 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 TTC6Q86TZ1 520 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 CERS3Q8IU89 383 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 ENAHQ8N8S7 591 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-230ENST00000488543 ZSCAN10Q96SZ4 725 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-230ENST00000488543 UBAC1Q9BSL1 405 aa14.14□□□□□ -0.15
HDAC6-230ENST00000488543 ZSCAN16Q9H4T2 348 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-230ENST00000488543 KRT85P78386 507 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 GUCY1B3Q02153 619 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 ZNF654Q8IZM8 581 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 TMTC2Q8N394 836 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 LTBP3Q9NS15 1303 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 ERICH2A1L162 156 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 EGFRP00533 1210 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 PTMAP06454 111 aaKnown RBP14.13□□□□□ -0.15
HDAC6-230ENST00000488543 RCAN1P53805 252 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 HDLBPQ00341 1268 aaKnown RBP14.13□□□□□ -0.15
HDAC6-230ENST00000488543 OTUD7BQ6GQQ9 843 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 C17orf53Q8N3J3 647 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-230ENST00000488543 USP25Q9UHP3 1055 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 ZKSCAN5Q9Y2L8 839 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 GJA3Q9Y6H8 435 aa14.13□□□□□ -0.15
HDAC6-230ENST00000488543 NMT2O60551 498 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 SLC3A2P08195 630 aaKnown RBP14.12□□□□□ -0.15
HDAC6-230ENST00000488543 UBE2HP62256 183 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 OGFOD1Q8N543 542 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 PHKBQ93100 1093 aa14.12□□□□□ -0.15
HDAC6-230ENST00000488543 ARID3AQ99856 593 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms