RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 CST3P01034 146 aaPredicted RBP8.59□□□□□ -1.03
USP48-209ENST00000487880 FGRP09769 529 aa8.59□□□□□ -1.03
USP48-209ENST00000487880 SLFN12Q8IYM2 578 aa8.59□□□□□ -1.03
USP48-209ENST00000487880 FOXQ1Q9C009 403 aa8.59□□□□□ -1.03
USP48-209ENST00000487880 LGR6Q9HBX8 967 aa8.59□□□□□ -1.03
USP48-209ENST00000487880 GMIPQ9P107 970 aa8.59□□□□□ -1.03
USP48-209ENST00000487880 IMPDH2P12268 514 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 FSTP19883 344 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 ADMP35318 185 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 ARID5AQ03989 594 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 NFIAQ12857 509 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 CDK5R2Q13319 367 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 PRAMEF13Q5VWM6 474 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 ZAR1Q86SH2 424 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 VPS37DQ86XT2 251 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 RBBP8NLQ8NC74 664 aaPredicted RBP8.58□□□□□ -1.04
USP48-209ENST00000487880 STRIP2Q9ULQ0 834 aa8.58□□□□□ -1.04
USP48-209ENST00000487880 SLC22A31A6NKX4 558 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 ADAM23O75077 832 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 OVOS1Q6IE37 1185 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 MCF2L2Q86YR7 1114 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 TMEM40Q8WWA1 233 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 FERD3LQ96RJ6 166 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 DBNDD2Q9BQY9 259 aa8.57□□□□□ -1.04
USP48-209ENST00000487880 UPK3BL1B0FP48 263 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 UPK3BL2E5RIL1 263 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 GSC2O15499 205 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 FURINP09958 794 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 YARSP54577 528 aaKnown RBP8.56□□□□□ -1.04
USP48-209ENST00000487880 MLECQ14165 292 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 LRRFIP1Q32MZ4 808 aaKnown RBP8.56□□□□□ -1.04
USP48-209ENST00000487880 CDCP2Q5VXM1 449 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 SLC51AQ86UW1 340 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 SHISA5Q8N114 240 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 MFSD2AQ8NA29 543 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 FAM13CQ8NE31 585 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 DPH2Q9BQC3 489 aaPredicted RBP8.56□□□□□ -1.04
USP48-209ENST00000487880 SRRTQ9BXP5 876 aaKnown RBP8.56□□□□□ -1.04
USP48-209ENST00000487880 ANTXR1Q9H6X2 564 aa8.56□□□□□ -1.04
USP48-209ENST00000487880 CHURC1-FNTBB4DL54 471 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 IGLV1-40P01703 118 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 RANGAP1P46060 587 aaPredicted RBP8.55□□□□□ -1.04
USP48-209ENST00000487880 CCDC81Q6ZN84 652 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 ATG4CQ96DT6 458 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 SHDQ96IW2 340 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 MFSD14AQ96MC6 490 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 TBC1D32Q96NH3 1257 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 DUSP23Q9BVJ7 150 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 CNNM2Q9H8M5 875 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 PRDM10Q9NQV6 1147 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 KLHL3Q9UH77 587 aa8.55□□□□□ -1.04
USP48-209ENST00000487880 SLITRK5O94991 958 aa8.54□□□□□ -1.04
USP48-209ENST00000487880 F13BP05160 661 aa8.54□□□□□ -1.04
USP48-209ENST00000487880 DNAJA1P31689 397 aaKnown RBP8.54□□□□□ -1.04
USP48-209ENST00000487880 GIPRP48546 466 aa8.54□□□□□ -1.04
USP48-209ENST00000487880 OGFOD3Q6PK18 319 aa8.54□□□□□ -1.04
USP48-209ENST00000487880 LSRQ86X29 649 aaPredicted RBP8.54□□□□□ -1.04
USP48-209ENST00000487880 CYB5D2Q8WUJ1 264 aa8.54□□□□□ -1.04
USP48-209ENST00000487880 LEFTY1O75610 366 aa8.53□□□□□ -1.04
USP48-209ENST00000487880 EIF6P56537 245 aaKnown RBP8.53□□□□□ -1.04
USP48-209ENST00000487880 NLRC3Q7RTR2 1065 aa8.53□□□□□ -1.04
USP48-209ENST00000487880 TAB3Q8N5C8 712 aaPredicted RBP8.53□□□□□ -1.04
USP48-209ENST00000487880 TOP6BLQ8N6T0 577 aa8.53□□□□□ -1.04
USP48-209ENST00000487880 PPP1R13LQ8WUF5 828 aa8.53□□□□□ -1.04
USP48-209ENST00000487880 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.53□□□□□ -1.041e-14■□□□□ 8.6
USP48-209ENST00000487880 FAM170BA6NMN3 283 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 TNFRSF10CO14798 259 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 EOMESO95936 686 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 FAM87AP0C7U9 286 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 NME1P15531 152 aaKnown RBP8.52□□□□□ -1.05
USP48-209ENST00000487880 ITGB7P26010 798 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 ARSHQ5FYA8 562 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 LETMD1Q6P1Q0 360 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 FAM214BQ7L5A3 538 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 FBXL6Q8N531 539 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 OR6P1Q8NGX9 317 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 DNAJB8Q8NHS0 232 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 GIMAP7Q8NHV1 300 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 TM9SF2Q99805 663 aa8.52□□□□□ -1.05
USP48-209ENST00000487880 ACRP10323 421 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 CPSF6Q16630 551 aaKnown RBP eCLIP8.51□□□□□ -1.052e-7■□□□□ 9.4
USP48-209ENST00000487880 FBXW10Q5XX13 1052 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 INTS3Q68E01 1043 aaKnown RBP8.51□□□□□ -1.05
USP48-209ENST00000487880 ZNF765Q7L2R6 523 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 ZDHHC13Q8IUH4 622 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 SHKBP1Q8TBC3 707 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 XAGE3Q8WTP9 111 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 MIPEPQ99797 713 aa8.51□□□□□ -1.05
USP48-209ENST00000487880 RGS13O14921 159 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 CYP27A1Q02318 531 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 PRSS36Q5K4E3 855 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 FAM169BQ8N8A8 192 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 C19orf47Q8N9M1 422 aaKnown RBP8.5□□□□□ -1.05
USP48-209ENST00000487880 RIN3Q8TB24 985 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 CPLX3Q8WVH0 158 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 SREK1Q8WXA9 508 aaKnown RBP8.5□□□□□ -1.05
USP48-209ENST00000487880 CRBNQ96SW2 442 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 SEMA6BQ9H3T3 888 aa8.5□□□□□ -1.05
USP48-209ENST00000487880 COL17A1Q9UMD9 1497 aaPredicted RBP8.5□□□□□ -1.05
USP48-209ENST00000487880 WDR64B1ANS9 1081 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms