RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NEK11Q8NG66 645 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 NAA15Q9BXJ9 866 aaKnown RBP13.92□□□□□ -0.18
COL3A1-206ENST00000487010 IRX2Q9BZI1 471 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-206ENST00000487010 KRT23Q9C075 422 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 NAPBQ9H115 298 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CEP131Q9UPN4 1083 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 TEX33O43247 280 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 PDE8BO95263 885 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 GPS2Q13227 327 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 RTN1Q16799 776 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 LONRF2Q1L5Z9 754 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 AKNAD1Q5T1N1 836 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 TOM1L2Q6ZVM7 507 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 SRGAP1Q7Z6B7 1085 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 ADGRG1Q9Y653 693 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 TIAM2Q8IVF5 1701 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 DEXIO95424 95 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 TRHP20396 242 aaPredicted RBP13.91□□□□□ -0.18
COL3A1-206ENST00000487010 CTSWP56202 376 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 CHMP4BP1P59074 171 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 RBL2Q08999 1139 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 NR5A1Q13285 461 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 SPATA1Q5VX52 437 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 RAD9BQ6WBX8 426 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 USP49Q70CQ1 688 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 PPFIBP1Q86W92 1011 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 CRACR2BQ8N4Y2 399 aaPredicted RBP13.91□□□□□ -0.18
COL3A1-206ENST00000487010 CSRNP2Q9H175 543 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 LZTFL1Q9NQ48 299 aa13.91□□□□□ -0.18
COL3A1-206ENST00000487010 WDR17Q8IZU2 1322 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 MAP2K7O14733 419 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 PBX1P40424 430 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 MUM1L1Q5H9M0 696 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 MFSD6Q6ZSS7 791 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 IGSF22Q8N9C0 903 aa13.9□□□□□ -0.18
COL3A1-206ENST00000487010 MYH3P11055 1940 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 MBD4O95243 580 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 WTAPQ15007 396 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 GIGYF2Q6Y7W6 1299 aaKnown RBP13.89□□□□□ -0.19
COL3A1-206ENST00000487010 NLRP10Q86W26 655 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CEP112Q8N8E3 955 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 OXER1Q8TDS5 423 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 HNRNPLLQ8WVV9 542 aaKnown RBP13.89□□□□□ -0.19
COL3A1-206ENST00000487010 STRN4Q9NRL3 753 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 AATFQ9NY61 560 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CDC23Q9UJX2 597 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CCDC196A0A1B0GTZ2 297 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 GSG1L2A8MUP6 293 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 KIF5CO60282 957 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CD44P16070 742 aaKnown RBP13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ATP2B1P20020 1258 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CUL4BQ13620 913 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 TUBB2AQ13885 445 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 RASGRP2Q7LDG7 609 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CCDC82Q8N4S0 544 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 MAGEB6Q8N7X4 407 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 STAG1Q8WVM7 1258 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ZKSCAN3Q9BRR0 538 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 TUBB2BQ9BVA1 445 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ZSWIM4Q9H7M6 989 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ANKZF1Q9H8Y5 726 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ARMT1Q9H993 441 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 CABP5Q9NP86 173 aa13.89□□□□□ -0.19
COL3A1-206ENST00000487010 ADD3Q9UEY8 706 aaKnown RBP13.89□□□□□ -0.19
COL3A1-206ENST00000487010 DCCP43146 1447 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 A0A0U1RQJ8 604 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 POTEB2H3BUK9 544 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 CAPN2P17655 700 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 GPTP24298 496 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 SART3Q15020 963 aaKnown RBP13.88□□□□□ -0.19
COL3A1-206ENST00000487010 HLFQ16534 295 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 CDKAL1Q5VV42 579 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 SH3RF1Q7Z6J0 888 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 CMTR1Q8N1G2 835 aaKnown RBP13.88□□□□□ -0.19
COL3A1-206ENST00000487010 CPLX3Q8WVH0 158 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 ATRIPQ8WXE1 791 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 EXOC4Q96A65 974 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 CTAGE1Q96RT6 745 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 PSD3Q9NYI0 1048 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 SYNRGQ9UMZ2 1314 aa13.88□□□□□ -0.19
COL3A1-206ENST00000487010 SHANK3Q9BYB0 1731 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 A0A087X0B3 334 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 H3BQF6 201 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 SEMA3EO15041 775 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 MFAP3LO75121 409 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 USP5P45974 858 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 MAP3K12Q12852 859 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 RRP12Q5JTH9 1297 aaKnown RBP13.87□□□□□ -0.19
COL3A1-206ENST00000487010 ZNF569Q5MCW4 686 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 DNAJC10Q8IXB1 793 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 TMTC2Q8N394 836 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 SPATA5Q8NB90 893 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 FANCBQ8NB91 859 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 MSANTD4Q8NCY6 345 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 LPIN2Q92539 896 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 PAGE5Q96GU1 130 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 AK7Q96M32 723 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 MTA3Q9BTC8 594 aa13.87□□□□□ -0.19
COL3A1-206ENST00000487010 PUF60Q9UHX1 559 aaKnown RBP13.87□□□□□ -0.19
COL3A1-206ENST00000487010 ADAM21Q9UKJ8 722 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms