RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 USP17L12C9JPN9 530 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 USP17L21D6R901 530 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 GPR25O00155 361 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 PDE4AP27815 886 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 SHMT1P34896 483 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 JAG1P78504 1218 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 EVX2Q03828 476 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 MOGSQ13724 837 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 TAF1CQ15572 869 aaPredicted RBP21.83■■□□□ 1.09
COL1A1-207ENST00000486572 GIMAP6Q6P9H5 292 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 ANKRD23Q86SG2 305 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 ZNF280CQ8ND82 737 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 R3HDMLQ9H3Y0 253 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 AS3MTQ9HBK9 375 aa21.83■■□□□ 1.09
COL1A1-207ENST00000486572 ARPP21Q9UBL0 812 aaPredicted RBP21.83■■□□□ 1.09
COL1A1-207ENST00000486572 PTPRFP10586 1907 aa21.82■■□□□ 1.08
COL1A1-207ENST00000486572 CASP8AP2Q9UKL3 1982 aa21.82■■□□□ 1.08
COL1A1-207ENST00000486572 SHROOM1Q2M3G4 852 aaPredicted RBP21.82■■□□□ 1.08
COL1A1-207ENST00000486572 CERKLQ49MI3 558 aaPredicted RBP21.82■■□□□ 1.08
COL1A1-207ENST00000486572 C12orf60Q5U649 245 aa21.82■■□□□ 1.08
COL1A1-207ENST00000486572 FASTKD5Q7L8L6 764 aaKnown RBP21.82■■□□□ 1.08
COL1A1-207ENST00000486572 RILPL2Q969X0 211 aa21.82■■□□□ 1.08
COL1A1-207ENST00000486572 SWAP70Q9UH65 585 aa21.82■■□□□ 1.08
COL1A1-207ENST00000486572 GH2P01242 217 aa21.81■■□□□ 1.08
COL1A1-207ENST00000486572 SPP2Q13103 211 aa21.81■■□□□ 1.08
COL1A1-207ENST00000486572 CTR9Q6PD62 1173 aa21.81■■□□□ 1.08
COL1A1-207ENST00000486572 TNS4Q8IZW8 715 aa21.81■■□□□ 1.08
COL1A1-207ENST00000486572 ZNF296Q8WUU4 475 aaPredicted RBP21.81■■□□□ 1.08
COL1A1-207ENST00000486572 ZFYVE28Q9HCC9 887 aa21.81■■□□□ 1.08
COL1A1-207ENST00000486572 CYP2D7A0A087X1C5 515 aa21.8■■□□□ 1.08
COL1A1-207ENST00000486572 ABCB5Q2M3G0 1257 aa21.8■■□□□ 1.08
COL1A1-207ENST00000486572 GADL1Q6ZQY3 521 aa21.8■■□□□ 1.08
COL1A1-207ENST00000486572 DYNLL2Q96FJ2 89 aa21.8■■□□□ 1.08
COL1A1-207ENST00000486572 WDR18Q9BV38 432 aa21.8■■□□□ 1.08
COL1A1-207ENST00000486572 EPB41L4AQ9HCS5 686 aaPredicted RBP21.8■■□□□ 1.08
COL1A1-207ENST00000486572 PATL2C9JE40 543 aaKnown RBP21.79■■□□□ 1.08
COL1A1-207ENST00000486572 PDHXO00330 501 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 APPP05067 770 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 TDO2P48775 406 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 SBK1Q52WX2 424 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 SLC44A5Q8NCS7 719 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 CABP5Q9NP86 173 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 HELLSQ9NRZ9 838 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 LOC285556D6RIA3 1793 aa21.79■■□□□ 1.08
COL1A1-207ENST00000486572 FKTNO75072 461 aa21.78■■□□□ 1.08
COL1A1-207ENST00000486572 GPAT2Q6NUI2 795 aa21.78■■□□□ 1.08
COL1A1-207ENST00000486572 C16orf86Q6ZW13 317 aa21.78■■□□□ 1.08
COL1A1-207ENST00000486572 NACAP1Q9BZK3 213 aa21.78■■□□□ 1.08
COL1A1-207ENST00000486572 ROBO3Q96MS0 1386 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 A0A0D9SFI3 127 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 SMIM22K7EJ46 135 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 HMGCS2P54868 508 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 MTMR2Q13614 643 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 CCDC129Q6ZRS4 1044 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 IFNL3Q8IZI9 196 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 PROCA1Q8NCQ7 364 aaPredicted RBP21.77■■□□□ 1.08
COL1A1-207ENST00000486572 FAM227BQ96M60 508 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 AGTPBP1Q9UPW5 1226 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 SLC45A1Q9Y2W3 748 aa21.77■■□□□ 1.08
COL1A1-207ENST00000486572 MYH8P13535 1937 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 TLR2O60603 784 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 NEFLP07196 543 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 CENPBP07199 599 aaPredicted RBP21.76■■□□□ 1.07
COL1A1-207ENST00000486572 CDK8P49336 464 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 BACE1P56817 501 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 NMIQ13287 307 aaPredicted RBP21.76■■□□□ 1.07
COL1A1-207ENST00000486572 RAB3GAP1Q15042 981 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 SH3D19Q5HYK7 790 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 TTC22Q5TAA0 569 aa21.76■■□□□ 1.07
COL1A1-207ENST00000486572 CENPQQ7L2Z9 268 aaPredicted RBP21.76■■□□□ 1.07
COL1A1-207ENST00000486572 PARK7Q99497 189 aaKnown RBP21.76■■□□□ 1.07
COL1A1-207ENST00000486572 MINDY4BA8MYZ0 360 aa21.75■■□□□ 1.07
COL1A1-207ENST00000486572 USP17L10C9JJH3 530 aa21.75■■□□□ 1.07
COL1A1-207ENST00000486572 MPHOSPH10O00566 681 aaKnown RBP21.75■■□□□ 1.07
COL1A1-207ENST00000486572 SDSP20132 328 aa21.75■■□□□ 1.07
COL1A1-207ENST00000486572 MCMDC2Q4G0Z9 681 aa21.75■■□□□ 1.07
COL1A1-207ENST00000486572 NAPBQ9H115 298 aa21.75■■□□□ 1.07
COL1A1-207ENST00000486572 C19orf81C9J6K1 198 aa21.74■■□□□ 1.07
COL1A1-207ENST00000486572 GSPT1P15170 499 aaKnown RBP21.74■■□□□ 1.07
COL1A1-207ENST00000486572 TREML2Q5T2D2 321 aa21.74■■□□□ 1.07
COL1A1-207ENST00000486572 TMEM179Q6ZVK1 233 aa21.74■■□□□ 1.07
COL1A1-207ENST00000486572 CTU1Q7Z7A3 348 aaKnown RBP21.74■■□□□ 1.07
COL1A1-207ENST00000486572 CCDC17Q96LX7 622 aa21.74■■□□□ 1.07
COL1A1-207ENST00000486572 TMOD4Q9NZQ9 345 aa21.74■■□□□ 1.07
COL1A1-207ENST00000486572 HIP1O00291 1037 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 FOXP2O15409 715 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 AKR1B1P15121 316 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 GUCY1A2P33402 732 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 SP3Q02447 781 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 DGKZQ13574 1117 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 SEPT2Q15019 361 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 ERO1AQ96HE7 468 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 FEZ1Q99689 392 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 DIAPH3Q9NSV4 1193 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 ADGRA2Q96PE1 1338 aa21.73■■□□□ 1.07
COL1A1-207ENST00000486572 CYP2C8P10632 490 aa21.72■■□□□ 1.07
COL1A1-207ENST00000486572 PABPC4Q13310 644 aaKnown RBP eCLIP21.72■■□□□ 1.07
COL1A1-207ENST00000486572 PNMA3Q9UL41 463 aa21.72■■□□□ 1.07
COL1A1-207ENST00000486572 CCDC171Q6TFL3 1326 aa21.72■■□□□ 1.07
COL1A1-207ENST00000486572 MFAP1P55081 439 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms