RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DYNLL1P63167 89 aaKnown RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 NFIAQ12857 509 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 TSR1Q2NL82 804 aaKnown RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 TYW1BQ6NUM6 668 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 PARP9Q8IXQ6 854 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 EVI5LQ96CN4 794 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 OTUD5Q96G74 571 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 OSBPL5Q9H0X9 879 aaPredicted RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 CABP5Q9NP86 173 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 DIAPH3Q9NSV4 1193 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 PI4KBQ9UBF8 816 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 FZD1Q9UP38 647 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 MYH1P12882 1939 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 HIP1O00291 1037 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 MPHOSPH10O00566 681 aaKnown RBP9.63□□□□□ -0.87
USP40-216ENST00000485943 MBD4O95243 580 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 ALDH1A1P00352 501 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 SLC10A3P09131 477 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 GNAT2P19087 354 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 CTCFP49711 727 aaPredicted RBP9.63□□□□□ -0.87
USP40-216ENST00000485943 GTF2A2P52657 109 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 FOSBP53539 338 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 INHBEP58166 350 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 KIF23Q02241 960 aaPredicted RBP9.63□□□□□ -0.87
USP40-216ENST00000485943 RASAL3Q86YV0 1011 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 KBTBD3Q8NAB2 608 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 OPTNQ96CV9 577 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 EDC3Q96F86 508 aaKnown RBP9.63□□□□□ -0.87
USP40-216ENST00000485943 AS3MTQ9HBK9 375 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 ZNF287Q9HBT7 754 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 MCM9Q9NXL9 1143 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 HERC5Q9UII4 1024 aaKnown RBP9.63□□□□□ -0.87
USP40-216ENST00000485943 SLC4A4Q9Y6R1 1079 aa9.63□□□□□ -0.87
USP40-216ENST00000485943 FLT1P17948 1338 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 RNF113AO15541 343 aaKnown RBP9.62□□□□□ -0.87
USP40-216ENST00000485943 USP2O75604 605 aaPredicted RBP9.62□□□□□ -0.87
USP40-216ENST00000485943 ZBTB48P10074 688 aaPredicted RBP9.62□□□□□ -0.87
USP40-216ENST00000485943 ADD2P35612 726 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 PDE1AP54750 535 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 PPP4CP60510 307 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 NUCB1Q02818 461 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 UBE3CQ15386 1083 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 CASC1Q6TDU7 716 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 ERO1BQ86YB8 467 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 IL27Q8NEV9 243 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 APPBP2Q92624 585 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 WNK4Q96J92 1243 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 FEZ1Q99689 392 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 ARMT1Q9H993 441 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 FAM198AQ9UFP1 575 aa9.62□□□□□ -0.87
USP40-216ENST00000485943 AOX1Q06278 1338 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 MYH8P13535 1937 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 RAD21O60216 631 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 TRPA1O75762 1119 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 CETPP11597 493 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 SNAPC2Q13487 334 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 VGLL4Q14135 290 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 CENPQQ7L2Z9 268 aaPredicted RBP9.61□□□□□ -0.87
USP40-216ENST00000485943 FOXP4Q8IVH2 680 aaPredicted RBP9.61□□□□□ -0.87
USP40-216ENST00000485943 SMC5Q8IY18 1101 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 DNAJC5GQ8N7S2 189 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 KHSRPQ92945 711 aaKnown RBP eCLIP9.61□□□□□ -0.876e-11■■□□□ 13.4
USP40-216ENST00000485943 ZKSCAN4Q969J2 545 aaPredicted RBP9.61□□□□□ -0.87
USP40-216ENST00000485943 NAPBQ9H115 298 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 TOMM22Q9NS69 142 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 ATP8A2Q9NTI2 1148 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 SERPINB13Q9UIV8 391 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 PALD1Q9ULE6 856 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 NAV1Q8NEY1 1877 aa9.61□□□□□ -0.87
USP40-216ENST00000485943 CCL15-CCL14A0A0B4J2E2 113 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 DDTLA6NHG4 134 aaPredicted RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 MINDY4BA8MYZ0 360 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 CTNND1O60716 968 aaKnown RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 IGHDP01880 384 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 ASNSP08243 561 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 RHBDL3P58872 404 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 PPATQ06203 517 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 KIF22Q14807 665 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 ARHGEF6Q15052 776 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 MAP3K11Q16584 847 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 CCL15Q16663 113 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 SPRYD7Q5W111 196 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 GADL1Q6ZQY3 521 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 ADGRA1Q86SQ6 560 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 CCAR1Q8IX12 1150 aaKnown RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 SCYL3Q8IZE3 742 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 LCORLQ8N3X6 602 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 JMYQ8N9B5 988 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP40-216ENST00000485943 SDR42E1Q8WUS8 393 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 RUFY2Q8WXA3 655 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 CLMNQ96JQ2 1002 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 FAM117AQ9C073 453 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 MKNK2Q9HBH9 465 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 CWC22Q9HCG8 908 aaKnown RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 DDX4Q9NQI0 724 aaKnown RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 TMOD4Q9NZQ9 345 aa9.6□□□□□ -0.87
USP40-216ENST00000485943 ISY1Q9ULR0 285 aaKnown RBP9.6□□□□□ -0.87
USP40-216ENST00000485943 TRIM75PA6NK02 468 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 FAM196BA6NMK8 535 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms