RNA–Protein interactions for RNA: ENST00000484252.5

LIMS2-215, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,099 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-215ENST00000484252 SPECC1Q5M775 1068 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 NUP133Q8WUM0 1156 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 GNL3LQ9NVN8 582 aaKnown RBP22.53■■□□□ 1.2
LIMS2-215ENST00000484252 PCDHB6Q9Y5E3 794 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 ZNF804BA4D1E1 1349 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 MAGEB6P1A0A0J9YX57 407 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 FOXN1O15353 648 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 ARHGAP6O43182 974 aa22.53■■□□□ 1.2
LIMS2-215ENST00000484252 ZNF18P17022 549 aa22.52■■□□□ 1.2
LIMS2-215ENST00000484252 TBX2Q13207 712 aaPredicted RBP22.52■■□□□ 1.2
LIMS2-215ENST00000484252 NR5A1Q13285 461 aa22.52■■□□□ 1.2
LIMS2-215ENST00000484252 ELF2Q15723 593 aa22.52■■□□□ 1.2
LIMS2-215ENST00000484252 KMT5BQ4FZB7 885 aa22.52■■□□□ 1.2
LIMS2-215ENST00000484252 KAT6BQ8WYB5 2073 aa22.52■■□□□ 1.2
LIMS2-215ENST00000484252 TNKSO95271 1327 aa22.52■■□□□ 1.19
LIMS2-215ENST00000484252 BMP15O95972 392 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 PCP11498 1178 aaKnown RBP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 GRIN1Q05586 938 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 NIP7Q9Y221 180 aaKnown RBP eCLIP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 CICQ96RK0 1608 aaPredicted RBP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 GOLGA6L9A6NEM1 432 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 TMEM232C9JQI7 657 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 ACTN4O43707 911 aaKnown RBP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 ATP6V1AP38606 617 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 NUTM2AQ8IVF1 878 aaPredicted RBP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 CCDC82Q8N4S0 544 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 SPATA20Q8TB22 786 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 SRRTQ9BXP5 876 aaKnown RBP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 INTS13Q9NVM9 706 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 AATFQ9NY61 560 aaKnown RBP eCLIP22.51■■□□□ 1.19
LIMS2-215ENST00000484252 NFE2L3Q9Y4A8 694 aa22.51■■□□□ 1.19
LIMS2-215ENST00000484252 TRIM75PA6NK02 468 aa22.5■■□□□ 1.19
LIMS2-215ENST00000484252 ERCC5P28715 1186 aaPredicted RBP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 CABP5Q9NP86 173 aa22.5■■□□□ 1.19
LIMS2-215ENST00000484252 RBM28Q9NW13 759 aaKnown RBP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 COL16A1Q07092 1604 aaPredicted RBP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 MINDY4BA8MYZ0 360 aa22.5■■□□□ 1.19
LIMS2-215ENST00000484252 PRR29P0C7W0 189 aa22.5■■□□□ 1.19
LIMS2-215ENST00000484252 CDK11BP21127 795 aaKnown RBP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 OXER1Q8TDS5 423 aa22.5■■□□□ 1.19
LIMS2-215ENST00000484252 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 V9GYY5 206 aaPredicted RBP22.5■■□□□ 1.19
LIMS2-215ENST00000484252 PRPF3O43395 683 aaKnown RBP22.49■■□□□ 1.19
LIMS2-215ENST00000484252 CALM1P0DP23 149 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 CALM2P0DP24 149 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 CALM3P0DP25 149 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 KRT2P35908 639 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 PLCD1P51178 756 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 SPECC1LQ69YQ0 1117 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 TMEM139Q8IV31 216 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 REXO1L1PQ8IX06 675 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 CMTR1Q8N1G2 835 aaKnown RBP22.49■■□□□ 1.19
LIMS2-215ENST00000484252 ZSCAN10Q96SZ4 725 aaPredicted RBP22.49■■□□□ 1.19
LIMS2-215ENST00000484252 BRIP1Q9BX63 1249 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 CSRNP2Q9H175 543 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 RAI14Q9P0K7 980 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 ZNF652Q9Y2D9 606 aa22.49■■□□□ 1.19
LIMS2-215ENST00000484252 COL22A1Q8NFW1 1626 aaPredicted RBP22.49■■□□□ 1.19
LIMS2-215ENST00000484252 FMR1Q06787 632 aaKnown RBP eCLIP22.48■■□□□ 1.19
LIMS2-215ENST00000484252 UBE4AQ14139 1066 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 FBXO38Q6PIJ6 1188 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 TRIM65Q6PJ69 517 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 CATIPQ7Z7H3 387 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 ADGRA1Q86SQ6 560 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 PHF20Q9BVI0 1012 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 DNAI1Q9UI46 699 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 LOC102724428A0A0B4J2F2 783 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 STX10O60499 249 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 SIK1P57059 783 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 SDR42E1Q8WUS8 393 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 FERMT2Q96AC1 680 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 BAG1Q99933 345 aaPredicted RBP22.48■■□□□ 1.19
LIMS2-215ENST00000484252 RIOK1Q9BRS2 568 aaKnown RBP22.48■■□□□ 1.19
LIMS2-215ENST00000484252 ABCF2Q9UG63 623 aa22.48■■□□□ 1.19
LIMS2-215ENST00000484252 DUOX1Q9NRD9 1551 aa22.47■■□□□ 1.19
LIMS2-215ENST00000484252 GABPB1Q06547 395 aaPredicted RBP22.47■■□□□ 1.19
LIMS2-215ENST00000484252 ENAHQ8N8S7 591 aaPredicted RBP22.47■■□□□ 1.19
LIMS2-215ENST00000484252 FGRP09769 529 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 PKN1Q16512 942 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 IQCA1Q86XH1 822 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 BRMS1Q9HCU9 246 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 FUT2Q10981 343 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 IFIT1BQ5T764 474 aaKnown RBP22.46■■□□□ 1.19
LIMS2-215ENST00000484252 ANKRD18AQ8IVF6 992 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 KRT222Q8N1A0 295 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 FAM53CQ9NYF3 392 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 PPP2R2CQ9Y2T4 447 aa22.46■■□□□ 1.19
LIMS2-215ENST00000484252 THRAP3Q9Y2W1 955 aaKnown RBP22.46■■□□□ 1.19
LIMS2-215ENST00000484252 DDAH1O94760 285 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 SLFN14P0C7P3 912 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 H2AFXP16104 143 aaPredicted RBP22.45■■□□□ 1.18
LIMS2-215ENST00000484252 ATP2B1P20020 1258 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 CAVIN4Q5BKX8 364 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 PDILTQ8N807 584 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 BCL11BQ9C0K0 894 aaPredicted RBP22.45■■□□□ 1.18
LIMS2-215ENST00000484252 VPS54Q9P1Q0 977 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 ROBO1Q9Y6N7 1651 aa22.45■■□□□ 1.18
LIMS2-215ENST00000484252 MYH6P13533 1939 aa22.44■■□□□ 1.18
LIMS2-215ENST00000484252 ITPK1Q13572 414 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms