RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PRDM10Q9NQV6 1147 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.88□□□□□ -0.83
USP40-213ENST00000483216 LEFTY1O75610 366 aa9.87□□□□□ -0.83
USP40-213ENST00000483216 ATE1O95260 518 aa9.87□□□□□ -0.83
USP40-213ENST00000483216 HTR3BO95264 441 aa9.87□□□□□ -0.83
USP40-213ENST00000483216 RAD51AP2Q09MP3 1159 aa9.87□□□□□ -0.83
USP40-213ENST00000483216 ZMYM1Q5SVZ6 1142 aa9.87□□□□□ -0.83
USP40-213ENST00000483216 REXO1Q8N1G1 1221 aaKnown RBP9.87□□□□□ -0.83
USP40-213ENST00000483216 GRIK1P39086 918 aa9.86□□□□□ -0.83
USP40-213ENST00000483216 SEZ6Q53EL9 994 aa9.86□□□□□ -0.83
USP40-213ENST00000483216 PRAMEF13Q5VWM6 474 aa9.86□□□□□ -0.83
USP40-213ENST00000483216 INTS5Q6P9B9 1019 aaKnown RBP9.86□□□□□ -0.83
USP40-213ENST00000483216 EHMT1Q9H9B1 1298 aa9.86□□□□□ -0.83
USP40-213ENST00000483216 REV1Q9UBZ9 1251 aa9.86□□□□□ -0.83
USP40-213ENST00000483216 COBLO75128 1261 aa9.85□□□□□ -0.83
USP40-213ENST00000483216 FOSL1P15407 271 aa9.85□□□□□ -0.83
USP40-213ENST00000483216 IGSF5Q9NSI5 407 aa9.85□□□□□ -0.83
USP40-213ENST00000483216 PCDHB14Q9Y5E9 798 aa9.85□□□□□ -0.83
USP40-213ENST00000483216 CYP26A1O43174 497 aa9.84□□□□□ -0.83
USP40-213ENST00000483216 SLITRK5O94991 958 aa9.84□□□□□ -0.83
USP40-213ENST00000483216 ZNF165P49910 485 aa9.84□□□□□ -0.83
USP40-213ENST00000483216 PAK2Q13177 524 aa9.84□□□□□ -0.83
USP40-213ENST00000483216 FAM214BQ7L5A3 538 aa9.84□□□□□ -0.83
USP40-213ENST00000483216 CD97P48960 835 aa9.83□□□□□ -0.84
USP40-213ENST00000483216 YARSP54577 528 aaKnown RBP9.83□□□□□ -0.84
USP40-213ENST00000483216 MLECQ14165 292 aa9.83□□□□□ -0.84
USP40-213ENST00000483216 FAM13CQ8NE31 585 aa9.83□□□□□ -0.84
USP40-213ENST00000483216 SPATA32Q96LK8 384 aa9.83□□□□□ -0.84
USP40-213ENST00000483216 EOMESO95936 686 aa9.82□□□□□ -0.84
USP40-213ENST00000483216 ERCC5P28715 1186 aaPredicted RBP9.82□□□□□ -0.84
USP40-213ENST00000483216 MCM4P33991 863 aa9.82□□□□□ -0.84
USP40-213ENST00000483216 SLFN12Q8IYM2 578 aa9.82□□□□□ -0.84
USP40-213ENST00000483216 MIPEPQ99797 713 aa9.82□□□□□ -0.84
USP40-213ENST00000483216 UPK3BL1B0FP48 263 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 UPK3BL2E5RIL1 263 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 HOXA10P31260 410 aaPredicted RBP9.81□□□□□ -0.84
USP40-213ENST00000483216 GJA8P48165 433 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 CLCQ05315 142 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 LETMD1Q6P1Q0 360 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 GK5Q6ZS86 529 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 RASGRP4Q8TDF6 673 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 HEXIM2Q96MH2 286 aaKnown RBP9.81□□□□□ -0.84
USP40-213ENST00000483216 DPH2Q9BQC3 489 aaPredicted RBP9.81□□□□□ -0.84
USP40-213ENST00000483216 ACBD3Q9H3P7 528 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 CCSER2Q9H7U1 834 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 MKNK2Q9HBH9 465 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 LRRC4CQ9HCJ2 640 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 GTF2IRD1Q9UHL9 959 aa9.81□□□□□ -0.84
USP40-213ENST00000483216 IGF2BP3O00425 579 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP40-213ENST00000483216 DNAJA2O60884 412 aa9.8□□□□□ -0.84
USP40-213ENST00000483216 MED26O95402 600 aa9.8□□□□□ -0.84
USP40-213ENST00000483216 COL9A2Q14055 689 aaPredicted RBP9.8□□□□□ -0.84
USP40-213ENST00000483216 XAGE3Q8WTP9 111 aa9.8□□□□□ -0.84
USP40-213ENST00000483216 GPRASP2Q96D09 838 aa9.8□□□□□ -0.84
USP40-213ENST00000483216 SLC22A31A6NKX4 558 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 KIAA1324LA8MWY0 1029 aaPredicted RBP9.79□□□□□ -0.84
USP40-213ENST00000483216 CHURC1-FNTBB4DL54 471 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 SSTR4P31391 388 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 LRP8Q14114 963 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 MSMPQ1L6U9 139 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 ZNF746Q6NUN9 644 aaPredicted RBP9.79□□□□□ -0.84
USP40-213ENST00000483216 RIN3Q8TB24 985 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 CYB5D2Q8WUJ1 264 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 GMIPQ9P107 970 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 KLHL3Q9UH77 587 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 MAPK8IP1Q9UQF2 711 aa9.79□□□□□ -0.84
USP40-213ENST00000483216 LRRFIP1Q32MZ4 808 aaKnown RBP9.78□□□□□ -0.84
USP40-213ENST00000483216 PRDM5Q9NQX1 630 aaPredicted RBP9.78□□□□□ -0.84
USP40-213ENST00000483216 ZC3H7BQ9UGR2 993 aaKnown RBP9.78□□□□□ -0.84
USP40-213ENST00000483216 IMPDH2P12268 514 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 OXCT1P55809 520 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 ARTNQ5T4W7 220 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 DTX1Q86Y01 620 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 DNAJB8Q8NHS0 232 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 COX4I2Q96KJ9 171 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 ZNRF3Q9ULT6 936 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 TPX2Q9ULW0 747 aaKnown RBP9.77□□□□□ -0.85
USP40-213ENST00000483216 CEP131Q9UPN4 1083 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 INPP5FQ9Y2H2 1132 aa9.77□□□□□ -0.85
USP40-213ENST00000483216 MEIS3P2A8K0S8 358 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 HYAL3O43820 417 aaPredicted RBP9.76□□□□□ -0.85
USP40-213ENST00000483216 SPINK2P20155 84 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 SOX9P48436 509 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 CDCP2Q5VXM1 449 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 C22orf34Q6ZV56 151 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 FAM181AQ8N9Y4 354 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 PPP1R13LQ8WUF5 828 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 CCDC74BQ96LY2 380 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 GINM1Q9NU53 330 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 U3KQE9 123 aa9.76□□□□□ -0.85
USP40-213ENST00000483216 SCO2A0A1W2PP80 73 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 CYP7A1P22680 504 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 ETV3P41162 512 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 SFRP5Q5T4F7 317 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 OVOS1Q6IE37 1185 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 ARHGAP27Q6ZUM4 889 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 CDH24Q86UP0 819 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 NETO1Q8TDF5 533 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 TMEM40Q8WWA1 233 aa9.75□□□□□ -0.85
USP40-213ENST00000483216 CNNM2Q9H8M5 875 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms