RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	GOLGA8B	A8MQT2	603 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	SOCS7	O14512	581 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	MYO1B	O43795	1136 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	TSPY3	P0CV98	308 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	TSPY8	P0CW00	308 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	RXRA	P19793	462 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	GJB2	P29033	226 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	C9orf131	Q5VYM1	1079 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	APOA5	Q6Q788	366 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	MYL10	Q9BUA6	226 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	IL17RB	Q9NRM6	502 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	PI4KB	Q9UBF8	816 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	SLC12A7	Q9Y666	1083 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	SBF1	O95248	1867 aa		13.15	□□□□□ -0.3
APTX-223	ENST00000479656	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-223	ENST00000479656	IFIT1B	Q5T764	474 aa	Known RBP	13.14	□□□□□ -0.31
APTX-223	ENST00000479656	GPC2	Q8N158	579 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	SRCAP	Q6ZRS2	3230 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	UTRN	P46939	3433 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656		H7C1D1	291 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	ZBTB43	O43298	467 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	JAK2	O60674	1132 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	DDN	O94850	711 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-223	ENST00000479656	CTDNEP1	O95476	244 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	NT5C2	P49902	561 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	PKP1	Q13835	747 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	SYNE3	Q6ZMZ3	975 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	MICU3	Q86XE3	530 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-223	ENST00000479656	CCDC144CP	Q8IYA2	1237 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-223	ENST00000479656	FAM151A	Q8WW52	585 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	SWAP70	Q9UH65	585 aa		13.14	□□□□□ -0.31
APTX-223	ENST00000479656	DICER1	Q9UPY3	1922 aa	Known RBP	13.13	□□□□□ -0.31
APTX-223	ENST00000479656	FAM196B	A6NMK8	535 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	PPFIA3	O75145	1194 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	ADD1	P35611	737 aa	Known RBP	13.13	□□□□□ -0.31
APTX-223	ENST00000479656	METAP2	P50579	478 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
APTX-223	ENST00000479656	NEDD1	Q8NHV4	660 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	EHD4	Q9H223	541 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	TCP11L1	Q9NUJ3	509 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	SCAF8	Q9UPN6	1271 aa	Known RBP	13.13	□□□□□ -0.31
APTX-223	ENST00000479656	CNTNAP1	P78357	1384 aa		13.13	□□□□□ -0.31
APTX-223	ENST00000479656	CDC27	P30260	824 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	SHMT1	P34896	483 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	NUCB2	P80303	420 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	KIF4B	Q2VIQ3	1234 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	FKBP1C	Q5VVH2	108 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	RCSD1	Q6JBY9	416 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	ZNF654	Q8IZM8	581 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	NSUN7	Q8NE18	718 aa	Known RBP	13.12	□□□□□ -0.31
APTX-223	ENST00000479656	NUP133	Q8WUM0	1156 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	DDX11	Q96FC9	970 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	LLPH	Q9BRT6	129 aa	Known RBP	13.12	□□□□□ -0.31
APTX-223	ENST00000479656	DNAJC18	Q9H819	358 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	GPRC5D	Q9NZD1	345 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	ASTN2	O75129	1339 aa	Predicted RBP	13.12	□□□□□ -0.31
APTX-223	ENST00000479656	GOLGA8A	A7E2F4	631 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	AKR1B1	P15121	316 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	EPS15	P42566	896 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	RAB3GAP1	Q15042	981 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	DGKH	Q86XP1	1220 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	SMARCC2	Q8TAQ2	1214 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	CHMP4C	Q96CF2	233 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	CSRNP1	Q96S65	589 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	TRIM34	Q9BYJ4	488 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	TMEM39B	Q9GZU3	492 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.12	□□□□□ -0.31
APTX-223	ENST00000479656	ZDHHC9	Q9Y397	364 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	ATRNL1	Q5VV63	1379 aa		13.12	□□□□□ -0.31
APTX-223	ENST00000479656	CPLX1	O14810	134 aa		13.11	□□□□□ -0.31
APTX-223	ENST00000479656	DHX16	O60231	1041 aa	Known RBP	13.11	□□□□□ -0.31
APTX-223	ENST00000479656	CCDC178	Q5BJE1	867 aa		13.11	□□□□□ -0.31
APTX-223	ENST00000479656	CATIP	Q7Z7H3	387 aa		13.11	□□□□□ -0.31
APTX-223	ENST00000479656	FAM83A	Q86UY5	434 aa		13.11	□□□□□ -0.31
APTX-223	ENST00000479656	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
APTX-223	ENST00000479656	PTPDC1	A2A3K4	754 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	GRIN3B	O60391	1043 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	SYT1	P21579	422 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	LARP1B	Q659C4	914 aa	Known RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	METTL16	Q86W50	562 aa	Known RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	CDAN1	Q8IWY9	1227 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	FANCB	Q8NB91	859 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	TRPM4	Q8TD43	1214 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	ANKS1A	Q92625	1134 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	HACL1	Q9UJ83	578 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	STX8	Q9UNK0	236 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	MPHOSPH10	O00566	681 aa	Known RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	TNNI2	P48788	182 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	TROAP	Q12815	778 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	RASA3	Q14644	834 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	CERKL	Q49MI3	558 aa	Predicted RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	TATDN1	Q6P1N9	297 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	TNPO1	Q92973	898 aa	Known RBP	13.1	□□□□□ -0.31
APTX-223	ENST00000479656	CEP95	Q96GE4	821 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	KAT14	Q9H8E8	782 aa		13.1	□□□□□ -0.31
APTX-223	ENST00000479656	COL2A1	P02458	1487 aa	Predicted RBP	13.09	□□□□□ -0.31
APTX-223	ENST00000479656	STX6	O43752	255 aa		13.09	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms