RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SDF4Q9BRK5 362 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 TRIM5Q9C035 493 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 BRCA1P38398 1863 aaKnown RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 CTR9Q6PD62 1173 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 ZNF579Q8NAF0 562 aaKnown RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 ARHGEF1Q92888 912 aaKnown RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 PRIMPOLQ96LW4 560 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 MYL10Q9BUA6 226 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 ARPP21Q9UBL0 812 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 SRP68Q9UHB9 627 aaKnown RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 LEMD3Q9Y2U8 911 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 GNL2Q13823 731 aaKnown RBP14.09□□□□□ -0.15
PTPRF-212ENST00000477970 DDX60LQ5H9U9 1706 aaKnown RBP14.09□□□□□ -0.15
PTPRF-212ENST00000477970 PRPF3O43395 683 aaKnown RBP14.09□□□□□ -0.15
PTPRF-212ENST00000477970 ZBTB7AO95365 584 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 SLC3A2P08195 630 aaKnown RBP14.09□□□□□ -0.15
PTPRF-212ENST00000477970 PLCB2Q00722 1185 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 MECOMQ03112 1051 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 FUT2Q10981 343 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 SHC4Q6S5L8 630 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 CRNKL1Q9BZJ0 848 aaKnown RBP14.09□□□□□ -0.15
PTPRF-212ENST00000477970 ROBO3Q96MS0 1386 aa14.09□□□□□ -0.15
PTPRF-212ENST00000477970 MYO1BO43795 1136 aa14.08□□□□□ -0.15
PTPRF-212ENST00000477970 DHX8Q14562 1220 aaKnown RBP14.08□□□□□ -0.15
PTPRF-212ENST00000477970 RRP12Q5JTH9 1297 aaKnown RBP14.08□□□□□ -0.15
PTPRF-212ENST00000477970 TRAPPC3LQ5T215 181 aa14.08□□□□□ -0.15
PTPRF-212ENST00000477970 CCDC144CPQ8IYA2 1237 aa14.08□□□□□ -0.15
PTPRF-212ENST00000477970 ENAHQ8N8S7 591 aaPredicted RBP14.08□□□□□ -0.15
PTPRF-212ENST00000477970 NAV1Q8NEY1 1877 aa14.08□□□□□ -0.15
PTPRF-212ENST00000477970 ZNF830Q96NB3 372 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-212ENST00000477970 IKBKBO14920 756 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 SYKP43405 635 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 GRAPQ13588 217 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 BICDL1Q6ZP65 573 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 IQCA1Q86XH1 822 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 GRAPLQ8TC17 118 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-212ENST00000477970 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-212ENST00000477970 CEP131Q9UPN4 1083 aa14.08□□□□□ -0.16
PTPRF-212ENST00000477970 IQSEC3Q9UPP2 1182 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-212ENST00000477970 BECN2A8MW95 431 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 POLD1P28340 1107 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 DYNLL1P63167 89 aaKnown RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 CERS3Q8IU89 383 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 DIS3L2Q8IYB7 885 aaKnown RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 KRI1Q8N9T8 703 aaKnown RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 CLIP2Q9UDT6 1046 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 MINDY4BA8MYZ0 360 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 XBP1P17861 261 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 GUCY1A2P33402 732 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 CATIPQ7Z7H3 387 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 DCP1AQ9NPI6 582 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 R3HCC1Q9Y3T6 440 aaKnown RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 LTBP1Q14766 1721 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 WTIPA6NIX2 430 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 SMTNL1A8MU46 457 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 PTPREP23469 700 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 TOB1P50616 345 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-212ENST00000477970 ZKSCAN3Q9BRR0 538 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 TOMM22Q9NS69 142 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 IMPACTQ9P2X3 320 aa14.07□□□□□ -0.16
PTPRF-212ENST00000477970 PTGS1P23219 599 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 KLRK1P26718 216 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 TROAPQ12815 778 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 IFIT1BQ5T764 474 aaKnown RBP14.06□□□□□ -0.16
PTPRF-212ENST00000477970 SPC24Q8NBT2 197 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 WDR66Q8TBY9 1149 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 PHF20Q9BVI0 1012 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 KCND1Q9NSA2 647 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 PYCARDQ9ULZ3 195 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 CCDC186Q7Z3E2 898 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 ANKS1AQ92625 1134 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 FBXO2Q9UK22 296 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-212ENST00000477970 CDK5RAP2Q96SN8 1893 aa14.06□□□□□ -0.16
PTPRF-212ENST00000477970 GTF2F1P35269 517 aaKnown RBP eCLIP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 ZRSR1Q15695 479 aaKnown RBP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 PKN1Q16512 942 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 STK11IPQ8N1F8 1099 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 MKRN1Q9UHC7 482 aaKnown RBP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 ATF5Q9Y2D1 282 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 BTBD18B2RXH4 712 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 BMP15O95972 392 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 MARCKSP29966 332 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 AOPEPQ8N6M6 819 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 FOCADQ5VW36 1801 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 XDHP47989 1333 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 DYNC1I1O14576 645 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 PPP4CP60510 307 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 TPM4P67936 248 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 DPCR1Q3MIW9 517 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 CCDC178Q5BJE1 867 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 NT5DC1Q5TFE4 455 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 KRBA2Q6ZNG9 492 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 TMTC3Q6ZXV5 915 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 NLGN1Q8N2Q7 840 aa14.05□□□□□ -0.16
PTPRF-212ENST00000477970 SRPRBQ9Y5M8 271 aaKnown RBP14.05□□□□□ -0.16
PTPRF-212ENST00000477970 C10orf71Q711Q0 1435 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 GYS1P13807 737 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 RFC4P35249 363 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 GSTO1P78417 241 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 CRY2Q49AN0 593 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms