RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 ERVK-24P63145 666 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 SH3D19Q5HYK7 790 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 EDC3Q96F86 508 aaKnown RBP12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 SUCLG2Q96I99 432 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 SNX27Q96L92 541 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 TBC1D2Q9BYX2 928 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 OSBPL5Q9H0X9 879 aaPredicted RBP12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 PRDM12Q9H4Q4 367 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 RBPJLQ9UBG7 517 aa12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 TCF20Q9UGU0 1960 aaKnown RBP12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 ATAD5Q96QE3 1844 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 USP17L5A8MUK1 530 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 KBTBD13C9JR72 458 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 TBC1D12O60347 775 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 ITGB8P26012 769 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 MAP2K5Q13163 448 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 PUM3Q15397 648 aaKnown RBP12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 ARRDC4Q8NCT1 418 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 PAGR1Q9BTK6 254 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 EPHX3Q9H6B9 360 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 TMOD4Q9NZQ9 345 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 NDUFB9Q9Y6M9 179 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 RFX7Q2KHR2 1363 aa12.14□□□□□ -0.47
SMARCB1-206ENST00000477836 UTYO14607 1347 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 FGFR2P21802 821 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 IGFBP4P22692 258 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 HOXA7P31268 230 aaPredicted RBP12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 ATP2B2Q01814 1243 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 MTMR2Q13614 643 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 SNX17Q15036 470 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 KAZALD1Q96I82 304 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 AS3MTQ9HBK9 375 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 MYH2Q9UKX2 1941 aa12.13□□□□□ -0.47
SMARCB1-206ENST00000477836 WDFY4Q6ZS81 3184 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 CYP2C19P33261 490 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 CAP2P40123 477 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 ADCYAP1R1P41586 468 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 TLE2Q04725 743 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 ADGRE1Q14246 886 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 TMEM31Q5JXX7 168 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 WDR78Q5VTH9 848 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 ANO1Q5XXA6 986 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 CCDC129Q6ZRS4 1044 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 TRPV1Q8NER1 839 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 KLHDC4Q8TBB5 520 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 FERMT2Q96AC1 680 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 TACC3Q9Y6A5 838 aa12.12□□□□□ -0.47
SMARCB1-206ENST00000477836 GLRX3O76003 335 aaKnown RBP12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 CLTBP09497 229 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 BMP1P13497 986 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 SLC5A1P13866 664 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 RAG1P15918 1043 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 PBX2P40425 430 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 BTDP43251 543 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 BACE1P56817 501 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 FPGSQ05932 587 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 RRP1BQ14684 758 aaKnown RBP12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 NCBP3Q53F19 620 aaKnown RBP12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 PBX4Q9BYU1 374 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 TSPYL2Q9H2G4 693 aaPredicted RBP12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 BICC1Q9H694 974 aaKnown RBP12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 GAKO14976 1311 aa12.11□□□□□ -0.47
SMARCB1-206ENST00000477836 CACNA1FO60840 1977 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 HNRNPUQ00839 825 aaKnown RBP eCLIP12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 C1orf53Q5VUE5 145 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 SLC4A10Q6U841 1118 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 DZIP1Q86YF9 867 aaKnown RBP12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 LPIN2Q92539 896 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 WDR18Q9BV38 432 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 CXXC1Q9P0U4 656 aaPredicted RBP12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 PIEZO1Q92508 2521 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 PLXNA1Q9UIW2 1896 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 SALL1Q9NSC2 1324 aa12.1□□□□□ -0.47
SMARCB1-206ENST00000477836 GRXCR1A8MXD5 290 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 ALDH1L1O75891 902 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 NBPF7P0C2Y1 421 aaPredicted RBP12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 CYBAP13498 195 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 PTPREP23469 700 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 TFF2Q03403 129 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 NPLOC4Q8TAT6 608 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 GTF3C2Q8WUA4 911 aaPredicted RBP12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 SRCIN1Q9C0H9 1055 aa12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 GNL3LQ9NVN8 582 aaKnown RBP12.09□□□□□ -0.47
SMARCB1-206ENST00000477836 SLC15A5A6NIM6 579 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 KIAA0355O15063 1070 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 PQBP1O60828 265 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 HOXC6P09630 235 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 KCNQ1P51787 676 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 CCNA1P78396 465 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 RABL6Q3YEC7 729 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 SLF2Q8IX21 1173 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 MICALL1Q8N3F8 863 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 TMEM39AQ9NV64 488 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 DENND2AQ9ULE3 1009 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 IVNS1ABPQ9Y6Y0 642 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 TRANK1O15050 2925 aa12.08□□□□□ -0.48
SMARCB1-206ENST00000477836 FAM86C2PA6NEL3 165 aa12.07□□□□□ -0.48
SMARCB1-206ENST00000477836 C19orf81C9J6K1 198 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms