RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 ADD2P35612 726 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 PLCD1P51178 756 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 FAM110CQ1W6H9 321 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 CERKLQ49MI3 558 aaPredicted RBP14.57□□□□□ -0.08
SYNE1-223ENST00000476519 RAET1EQ8TD07 263 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 EDC3Q96F86 508 aaKnown RBP14.57□□□□□ -0.08
SYNE1-223ENST00000476519 ATP8A2Q9NTI2 1148 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 KIAA0100Q14667 2235 aaKnown RBP14.57□□□□□ -0.08
SYNE1-223ENST00000476519 PDE4DIPQ5VU43 2346 aa14.57□□□□□ -0.08
SYNE1-223ENST00000476519 POTEFA5A3E0 1075 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 GDF11O95390 407 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 GH2P01242 217 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 RRP1P56182 461 aaKnown RBP14.56□□□□□ -0.08
SYNE1-223ENST00000476519 MTMR2Q13614 643 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 SLC4A8Q2Y0W8 1093 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 GPATCH3Q96I76 525 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 ASCC2Q9H1I8 757 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-223ENST00000476519 CABP5Q9NP86 173 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 DCP1AQ9NPI6 582 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-223ENST00000476519 MCM9Q9NXL9 1143 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 PCDHB15Q9Y5E8 787 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 DOCK2Q92608 1830 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 MYPNQ86TC9 1320 aa14.56□□□□□ -0.08
SYNE1-223ENST00000476519 TNRC18O15417 2968 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-223ENST00000476519 GRK4P32298 578 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 GABPAQ06546 454 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 ABCB5Q2M3G0 1257 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 USP17L2Q6R6M4 530 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 LCORLQ8N3X6 602 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 ANKRD13CQ8N6S4 541 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 SH3TC2Q8TF17 1288 aa14.55□□□□□ -0.08
SYNE1-223ENST00000476519 TNPO2O14787 897 aaKnown RBP14.54□□□□□ -0.08
SYNE1-223ENST00000476519 ECM2O94769 699 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-223ENST00000476519 SHMT1P34896 483 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 USP14P54578 494 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 IRX3P78415 501 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-223ENST00000476519 PRKCZQ05513 592 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 IRF5Q13568 498 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 SDR42E1Q8WUS8 393 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 COA7Q96BR5 231 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 DDRGK1Q96HY6 314 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 P2RX7Q99572 595 aaKnown RBP14.54□□□□□ -0.08
SYNE1-223ENST00000476519 ARMT1Q9H993 441 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 EMILIN3Q9NT22 766 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 MORF4L1Q9UBU8 362 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 SWAP70Q9UH65 585 aa14.54□□□□□ -0.08
SYNE1-223ENST00000476519 MAST2Q6P0Q8 1798 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 MBD4O95243 580 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 EN2P19622 333 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-223ENST00000476519 FLT3LGP49771 235 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 RAB3GAP1Q15042 981 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 SHROOM1Q2M3G4 852 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-223ENST00000476519 SLAIN1Q8ND83 568 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 PXYLP1Q8TE99 480 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 GTF3C2Q8WUA4 911 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-223ENST00000476519 C12orf42Q96LP6 360 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 KIAA1683Q9H0B3 1180 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 BRCA2P51587 3418 aa14.53□□□□□ -0.08
SYNE1-223ENST00000476519 PRKAB2O43741 272 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 UBXN2AP68543 259 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 AAMPQ13685 434 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 LRRFIP1Q32MZ4 808 aaKnown RBP14.52□□□□□ -0.09
SYNE1-223ENST00000476519 AMOTL1Q8IY63 956 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 KBTBD3Q8NAB2 608 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 GPRC5AQ8NFJ5 357 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 GABRQQ9UN88 632 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 DOCK1Q14185 1865 aa14.52□□□□□ -0.09
SYNE1-223ENST00000476519 MKI67P46013 3256 aaKnown RBP14.52□□□□□ -0.09
SYNE1-223ENST00000476519 TTC41PQ6P2S7 1318 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L15C9J2P7 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L13C9JLJ4 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L11C9JVI0 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L18D6R9N7 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L22D6RA61 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L17D6RBQ6 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L19D6RCP7 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L20D6RJB6 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 ERC2O15083 957 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 ADCY3O60266 1144 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 ZFYP08048 801 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-223ENST00000476519 CAPN2P17655 700 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 HERVK_113P62684 666 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L24Q0WX57 530 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 SLFNL1Q499Z3 407 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 C12orf60Q5U649 245 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 NKX2-3Q8TAU0 364 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 CCDC17Q96LX7 622 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 FEZ1Q99689 392 aa14.51□□□□□ -0.09
SYNE1-223ENST00000476519 PUS7LQ9H0K6 701 aaKnown RBP14.51□□□□□ -0.09
SYNE1-223ENST00000476519 BIN2Q9UBW5 565 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L12C9JPN9 530 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 USP17L21D6R901 530 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 RNF113AO15541 343 aaKnown RBP14.5□□□□□ -0.09
SYNE1-223ENST00000476519 GJB1P08034 283 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 GUCY1A2P33402 732 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 PRPF38BQ5VTL8 546 aaKnown RBP14.5□□□□□ -0.09
SYNE1-223ENST00000476519 GIMAP6Q6P9H5 292 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 TMEM179Q6ZVK1 233 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 ACER1Q8TDN7 264 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 STRBPQ96SI9 672 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms