RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 STRBPQ96SI9 672 aaKnown RBP18.19■□□□□ 0.5
LIMS1-212ENST00000474038 ATP8A2Q9NTI2 1148 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 MCM9Q9NXL9 1143 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 SLC4A4Q9Y6R1 1079 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 M0R2C6 588 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 PDHXO00330 501 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 CXCL11O14625 94 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 PLCD1P51178 756 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 ZMYM1Q5SVZ6 1142 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 SEC62Q99442 399 aaKnown RBP18.18■□□□□ 0.5
LIMS1-212ENST00000474038 TRIM34Q9BYJ4 488 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 EHD4Q9H223 541 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 ZSWIM8A7E2V4 1837 aa18.18■□□□□ 0.5
LIMS1-212ENST00000474038 TRIM6-TRIM34B2RNG4 842 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 GPAA1O43292 621 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 POLR3DP05423 398 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-212ENST00000474038 CENPBP07199 599 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-212ENST00000474038 CAP2P40123 477 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 EVX2Q03828 476 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 GPAT2Q6NUI2 795 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 SERPINB13Q9UIV8 391 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 PTPN22Q9Y2R2 807 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 AFG3L2Q9Y4W6 797 aa18.17■□□□□ 0.5
LIMS1-212ENST00000474038 CENPFP49454 3210 aa18.16■□□□□ 0.5
LIMS1-212ENST00000474038 A0A0G2JLL6 359 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-212ENST00000474038 ECM2O94769 699 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-212ENST00000474038 CYP2D6P10635 497 aa18.16■□□□□ 0.5
LIMS1-212ENST00000474038 PRRT2Q7Z6L0 340 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-212ENST00000474038 ARHGAP39Q9C0H5 1083 aa18.16■□□□□ 0.5
LIMS1-212ENST00000474038 CPA4Q9UI42 421 aa18.16■□□□□ 0.5
LIMS1-212ENST00000474038 TRIM75PA6NK02 468 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 GSG1L2A8MUP6 293 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 JAG1P78504 1218 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 TATDN1Q6P1N9 297 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 C17orf99Q6UX52 265 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 GADL1Q6ZQY3 521 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 TICAM2Q86XR7 235 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 RILPL2Q969X0 211 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 ADGRA2Q96PE1 1338 aa18.15■□□□□ 0.5
LIMS1-212ENST00000474038 CYP2D7A0A087X1C5 515 aa18.14■□□□□ 0.49
LIMS1-212ENST00000474038 USP17L12C9JPN9 530 aa18.14■□□□□ 0.49
LIMS1-212ENST00000474038 USP17L21D6R901 530 aa18.14■□□□□ 0.49
LIMS1-212ENST00000474038 LACTBP83111 547 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-212ENST00000474038 GABPAQ06546 454 aa18.14■□□□□ 0.49
LIMS1-212ENST00000474038 SHROOM1Q2M3G4 852 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-212ENST00000474038 DDRGK1Q96HY6 314 aa18.14■□□□□ 0.49
LIMS1-212ENST00000474038 SMIM22K7EJ46 135 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 GDF11O95390 407 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 NEFLP07196 543 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 CYP2C8P10632 490 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 GNAT2P19087 354 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 SHMT1P34896 483 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 C12orf60Q5U649 245 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 GIMAP6Q6P9H5 292 aa18.13■□□□□ 0.49
LIMS1-212ENST00000474038 CENPQQ7L2Z9 268 aaPredicted RBP18.13■□□□□ 0.49
LIMS1-212ENST00000474038 FASTKD5Q7L8L6 764 aaKnown RBP18.13■□□□□ 0.49
LIMS1-212ENST00000474038 PARK7Q99497 189 aaKnown RBP18.13■□□□□ 0.49
LIMS1-212ENST00000474038 LOC285556D6RIA3 1793 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 ASNSP08243 561 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 CTGFP29279 349 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 KIF22Q14807 665 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 ARHGEF6Q15052 776 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 TTC22Q5TAA0 569 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 CTR9Q6PD62 1173 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 CCDC129Q6ZRS4 1044 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 DYNLL2Q96FJ2 89 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 FAM227BQ96M60 508 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 EPB41L4AQ9HCS5 686 aaPredicted RBP18.12■□□□□ 0.49
LIMS1-212ENST00000474038 ZBTB21Q9ULJ3 1066 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 PTCH2Q9Y6C5 1203 aa18.12■□□□□ 0.49
LIMS1-212ENST00000474038 A0A0D9SFI3 127 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 USP17L5A8MUK1 530 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 PATL2C9JE40 543 aaKnown RBP18.11■□□□□ 0.49
LIMS1-212ENST00000474038 SPP2Q13103 211 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 NMIQ13287 307 aaPredicted RBP18.11■□□□□ 0.49
LIMS1-212ENST00000474038 SBK1Q52WX2 424 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 AMOTL1Q8IY63 956 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 SLC44A5Q8NCS7 719 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 HELLSQ9NRZ9 838 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 GINM1Q9NU53 330 aa18.11■□□□□ 0.49
LIMS1-212ENST00000474038 TNRC18O15417 2968 aaPredicted RBP18.11■□□□□ 0.49
LIMS1-212ENST00000474038 GH2P01242 217 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 APPP05067 770 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 GSPT1P15170 499 aaKnown RBP18.1■□□□□ 0.49
LIMS1-212ENST00000474038 SDSP20132 328 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 CERKLQ49MI3 558 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-212ENST00000474038 IFNL3Q8IZI9 196 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 ZNF280CQ8ND82 737 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 ARMC5Q96C12 935 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 ARPP21Q9UBL0 812 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-212ENST00000474038 TAOK2Q9UL54 1235 aa18.1■□□□□ 0.49
LIMS1-212ENST00000474038 FOXP2O15409 715 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 BCRP11274 1271 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 PSMC4P43686 418 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 TDO2P48775 406 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 ABCB5Q2M3G0 1257 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 MCMDC2Q4G0Z9 681 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 TREML2Q5T2D2 321 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 CCDC136Q96JN2 1154 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 TRIM47Q96LD4 638 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms