RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 GABPAQ06546 454 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 SHROOM1Q2M3G4 852 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-221ENST00000472563 TREML2Q5T2D2 321 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 KBTBD3Q8NAB2 608 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 SMCR8Q8TEV9 937 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-221ENST00000472563 SDR42E1Q8WUS8 393 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 ATP8A2Q9NTI2 1148 aa14.43□□□□□ -0.1
SYNE1-221ENST00000472563 USP17L10C9JJH3 530 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 PRKAB2O43741 272 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 HOXD10P28358 340 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 CTGFP29279 349 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 SHMT1P34896 483 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 MTMR2Q13614 643 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 CERKLQ49MI3 558 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-221ENST00000472563 TSHZ3Q63HK5 1081 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 GCC1Q96CN9 775 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 TRIM47Q96LD4 638 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 TMOD4Q9NZQ9 345 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 DOCK2Q92608 1830 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 HTTP42858 3142 aa14.42□□□□□ -0.1
SYNE1-221ENST00000472563 ERC2O15083 957 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 GLRX3O76003 335 aaKnown RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 FMNL1O95466 1100 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 CHGBP05060 677 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 ZFYP08048 801 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 OSBPP22059 807 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 HOXA7P31268 230 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 ABCB5Q2M3G0 1257 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 OTUD7AQ8TE49 926 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 PUS7LQ9H0K6 701 aaKnown RBP14.41□□□□□ -0.1
SYNE1-221ENST00000472563 CABP5Q9NP86 173 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 SRRDQ9UH36 339 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 PTCH2Q9Y6C5 1203 aa14.41□□□□□ -0.1
SYNE1-221ENST00000472563 RNF113AO15541 343 aaKnown RBP14.4□□□□□ -0.1
SYNE1-221ENST00000472563 GCLCP48506 637 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-221ENST00000472563 FCGRTP55899 365 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 NBPF11Q86T75 865 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 PI4K2BQ8TCG2 481 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 DDRGK1Q96HY6 314 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 ASCC2Q9H1I8 757 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-221ENST00000472563 ZBTB47Q9UFB7 747 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-221ENST00000472563 SWAP70Q9UH65 585 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 SLC4A4Q9Y6R1 1079 aa14.4□□□□□ -0.1
SYNE1-221ENST00000472563 CYP2D6P10635 497 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 MX1P20591 662 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 EVX2Q03828 476 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 FAM110CQ1W6H9 321 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 LRRFIP1Q32MZ4 808 aaKnown RBP14.39□□□□□ -0.11
SYNE1-221ENST00000472563 SLC9C1Q4G0N8 1177 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 ANKRD45Q5TZF3 282 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 C12orf60Q5U649 245 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L2Q6R6M4 530 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 APPBP2Q92624 585 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 ZNF333Q96JL9 665 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 STRBPQ96SI9 672 aaKnown RBP14.39□□□□□ -0.11
SYNE1-221ENST00000472563 EMILIN3Q9NT22 766 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 AK9Q5TCS8 1911 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 SALL3Q9BXA9 1300 aa14.39□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L12C9JPN9 530 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L21D6R901 530 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 GUCY1A2P33402 732 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 USP14P54578 494 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 IRX3P78415 501 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-221ENST00000472563 RAB3GAP1Q15042 981 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 AMOTL1Q8IY63 956 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 ANKRD13CQ8N6S4 541 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 OSBP2Q969R2 916 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 C12orf42Q96LP6 360 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 KIAA1683Q9H0B3 1180 aa14.38□□□□□ -0.11
SYNE1-221ENST00000472563 ECM2O94769 699 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-221ENST00000472563 SEPT2Q15019 361 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 GIMAP6Q6P9H5 292 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 ACER1Q8TDN7 264 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 DYNLL2Q96FJ2 89 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 P2RX7Q99572 595 aaKnown RBP14.37□□□□□ -0.11
SYNE1-221ENST00000472563 FEZ1Q99689 392 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 RWDD1Q9H446 243 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-221ENST00000472563 MORF4L1Q9UBU8 362 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 STAP2Q9UGK3 403 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 DOCK1Q14185 1865 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 MYPNQ86TC9 1320 aa14.37□□□□□ -0.11
SYNE1-221ENST00000472563 CYP2D7A0A087X1C5 515 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 GSG1L2A8MUP6 293 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 TNPO2O14787 897 aaKnown RBP14.36□□□□□ -0.11
SYNE1-221ENST00000472563 GNAT2P19087 354 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 HERVK_113P62684 666 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 PRKCZQ05513 592 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 CTR9Q6PD62 1173 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 TMEM179Q6ZVK1 233 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 SMC5Q8IY18 1101 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 SLC44A5Q8NCS7 719 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 EXOC6Q8TAG9 804 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 RAET1EQ8TD07 263 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 SH3TC2Q8TF17 1288 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 CCDC17Q96LX7 622 aa14.36□□□□□ -0.11
SYNE1-221ENST00000472563 ARPP21Q9UBL0 812 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L15C9J2P7 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L13C9JLJ4 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L11C9JVI0 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L18D6R9N7 530 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms