RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NBPF10Q6P3W6 841 aaKnown RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 FGFR1OP2Q9NVK5 253 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 TPCN1Q9ULQ1 816 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 DNMT1P26358 1616 aaKnown RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 A0A087WUV0 522 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ARID5AQ03989 594 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 FAM177BA6PVY3 158 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 SMIM24O75264 130 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ATP5HO75947 161 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 C10orf76Q5T2E6 689 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 UBE3BQ7Z3V4 1068 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ASIC3Q9UHC3 531 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 SCINQ9Y6U3 715 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ANO1Q5XXA6 986 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 RIPOR2Q9Y4F9 1068 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 PFDN6O15212 129 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 VTI1AQ96AJ9 217 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 KRT15P19012 456 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 NLRP7Q8WX94 980 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 KDM3AQ9Y4C1 1321 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 PTPDC1A2A3K4 754 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 N4BP1O75113 896 aaKnown RBP14.71□□□□□ -0.05
COL6A3-209ENST00000472056 IGHDP01880 384 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 FAM81BQ96LP2 452 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 ZNF202O95125 648 aa14.71□□□□□ -0.05
COL6A3-209ENST00000472056 HAUS4Q9H6D7 363 aa14.71□□□□□ -0.06
COL6A3-209ENST00000472056 RIC8AQ9NPQ8 531 aa14.71□□□□□ -0.06
COL6A3-209ENST00000472056 MBIPQ9NS73 344 aa14.71□□□□□ -0.06
COL6A3-209ENST00000472056 RAPGEF1Q13905 1077 aa14.71□□□□□ -0.06
COL6A3-209ENST00000472056 RASIP1Q5U651 963 aa14.71□□□□□ -0.06
COL6A3-209ENST00000472056 LMNB1P20700 586 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 POSTNQ15063 836 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 TM6SF1Q9BZW5 370 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 AMFRQ9UKV5 643 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 MYO5CQ9NQX4 1742 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 TNFAIP3P21580 790 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 PROSER2Q86WR7 435 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-209ENST00000472056 PDCD7Q8N8D1 485 aaKnown RBP14.7□□□□□ -0.06
COL6A3-209ENST00000472056 BCL2L12Q9HB09 334 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 UGGT2Q9NYU1 1516 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 SMIM23A6NLE4 172 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 MSH6P52701 1360 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 ALS2CLQ60I27 953 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 FAM135BQ49AJ0 1406 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 RPS6KB1P23443 525 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 RILPQ96NA2 401 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 SH2D4AQ9H788 454 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 ANGEL1Q9UNK9 670 aaKnown RBP14.7□□□□□ -0.06
COL6A3-209ENST00000472056 TRAF5O00463 557 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 SFMBT2Q5VUG0 894 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 CSGALNACT2Q8N6G5 542 aa14.7□□□□□ -0.06
COL6A3-209ENST00000472056 DDX54Q8TDD1 881 aaKnown RBP14.7□□□□□ -0.06
COL6A3-209ENST00000472056 ZNF277Q9NRM2 450 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-209ENST00000472056 GOLGA8CPA6NN73 597 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 EIF3BP55884 814 aaKnown RBP14.69□□□□□ -0.06
COL6A3-209ENST00000472056 NBPF14Q5TI25 921 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 PPP1R21Q6ZMI0 780 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 RETREG2Q8NC44 543 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 CCDC197Q8NCU1 140 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 NT5C3AQ9H0P0 336 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ABCD1P33897 745 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ANKRD13DQ6ZTN6 518 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 CARD6Q9BX69 1037 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 MYH6P13533 1939 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 SLC17A8Q8NDX2 589 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ANKRD12Q6UB98 2062 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 DNM2P50570 870 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 AMOTL2Q9Y2J4 779 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 IL9RQ01113 521 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ATP2B3Q16720 1220 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 HELBQ8NG08 1087 aaPredicted RBP14.69□□□□□ -0.06
COL6A3-209ENST00000472056 BCAS4Q8TDM0 211 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 BAG5Q9UL15 447 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ARHGEF11O15085 1522 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 MCM7P33993 719 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 HYOU1Q9Y4L1 999 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 CCDC93Q567U6 631 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 CTNND2Q9UQB3 1225 aa14.69□□□□□ -0.06
COL6A3-209ENST00000472056 ST5P78524 1137 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 OR8K1Q8NGG5 319 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 ANGPTL2Q9UKU9 493 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 RNF113AO15541 343 aaKnown RBP14.68□□□□□ -0.06
COL6A3-209ENST00000472056 CCDC105Q8IYK2 499 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 TRAPPC8Q9Y2L5 1435 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 INPP1P49441 399 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 RUBCNQ92622 972 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 DTNBP1Q96EV8 351 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 TXNDC9O14530 226 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 KAT6AQ92794 2004 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 P4HA1P13674 534 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 CCT6AP40227 531 aaKnown RBP14.68□□□□□ -0.06
COL6A3-209ENST00000472056 ETF1P62495 437 aaKnown RBP14.68□□□□□ -0.06
COL6A3-209ENST00000472056 KIFC3Q9BVG8 833 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 PI4KAP2A4QPH2 592 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 CHMLP26374 656 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 SLC12A2P55011 1212 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 ZC3H6P61129 1189 aaKnown RBP14.68□□□□□ -0.06
COL6A3-209ENST00000472056 PLEKHM2Q8IWE5 1019 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 PI4KAP1Q8N8J0 262 aa14.68□□□□□ -0.06
COL6A3-209ENST00000472056 FNBP1Q96RU3 617 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms