RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 DTNBO60941 627 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 DDAH1O94760 285 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 FDPSP14324 419 aaKnown RBP10.96□□□□□ -0.65
VPS52-216ENST00000471309 RASA1P20936 1047 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 GABPAQ06546 454 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 RTN1Q16799 776 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 SLC4A8Q2Y0W8 1093 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 FAM47AQ5JRC9 791 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 FOXD4L5Q5VV16 416 aaPredicted RBP10.96□□□□□ -0.65
VPS52-216ENST00000471309 CDC37L1Q7L3B6 337 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 RAB11FIP4Q86YS3 637 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 AGBL3Q8NEM8 1001 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 FOXD4L4Q8WXT5 416 aaPredicted RBP10.96□□□□□ -0.65
VPS52-216ENST00000471309 ANKS1AQ92625 1134 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 MYL10Q9BUA6 226 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 EHD4Q9H223 541 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 MKNK2Q9HBH9 465 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 FAM217BQ9NTX9 383 aaPredicted RBP10.96□□□□□ -0.65
VPS52-216ENST00000471309 TCP11L1Q9NUJ3 509 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 SWAP70Q9UH65 585 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 HDAC9Q9UKV0 1011 aa10.96□□□□□ -0.65
VPS52-216ENST00000471309 ATRNL1Q5VV63 1379 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 H3BQV1 296 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 RAD17O75943 681 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 HLA-DOAP06340 250 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 RXRAP19793 462 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 CDC27P30260 824 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 CDK8P49336 464 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 RBM5P52756 815 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS52-216ENST00000471309 TFAP4Q01664 338 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 NFIAQ12857 509 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 NTRK3Q16288 839 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 CFAP100Q494V2 611 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 IFFO2Q5TF58 517 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 MCTP1Q6DN14 999 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 CATIPQ7Z7H3 387 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 DGKHQ86XP1 1220 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 ZNF444Q8N0Y2 327 aaPredicted RBP10.95□□□□□ -0.66
VPS52-216ENST00000471309 SLC44A5Q8NCS7 719 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 NLGN2Q8NFZ4 835 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 JDP2Q8WYK2 163 aa10.95□□□□□ -0.66
VPS52-216ENST00000471309 DHX36Q9H2U1 1008 aaKnown RBP10.95□□□□□ -0.66
VPS52-216ENST00000471309 RBM28Q9NW13 759 aaKnown RBP10.95□□□□□ -0.66
VPS52-216ENST00000471309 SPDYE2BA6NHP3 402 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 ENTPD3O75355 529 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 SPDYE6P0CI01 402 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 TSPY3P0CV98 308 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 TSPY8P0CW00 308 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 IFNAR1P17181 557 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 ADD1P35611 737 aaKnown RBP10.94□□□□□ -0.66
VPS52-216ENST00000471309 MMP14P50281 582 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 CXCL9Q07325 125 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 TROAPQ12815 778 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 SKOR2Q2VWA4 1001 aaPredicted RBP10.94□□□□□ -0.66
VPS52-216ENST00000471309 CIAPIN1Q6FI81 312 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 RCSD1Q6JBY9 416 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 CCDC144CPQ8IYA2 1237 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 OGFOD1Q8N543 542 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 FANCBQ8NB91 859 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 TMEM87AQ8NBN3 555 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 MTMR14Q8NCE2 650 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 NEDD1Q8NHV4 660 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 MAP3K14Q99558 947 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 IL17RBQ9NRM6 502 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 ORC3Q9UBD5 711 aaPredicted RBP10.94□□□□□ -0.66
VPS52-216ENST00000471309 FAM198AQ9UFP1 575 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 SERPINB13Q9UIV8 391 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 PCDHAC2Q9Y5I4 1007 aa10.94□□□□□ -0.66
VPS52-216ENST00000471309 DICER1Q9UPY3 1922 aaKnown RBP10.94□□□□□ -0.66
VPS52-216ENST00000471309 NMT2O60551 498 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 FMNL1O95466 1100 aaPredicted RBP10.93□□□□□ -0.66
VPS52-216ENST00000471309 RPS12P25398 132 aaKnown RBP10.93□□□□□ -0.66
VPS52-216ENST00000471309 NOVP48745 357 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 RESTQ13127 1097 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 TNIP1Q15025 636 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 NUP133Q8WUM0 1156 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 WASF1Q92558 559 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 PRMT6Q96LA8 375 aaPredicted RBP10.93□□□□□ -0.66
VPS52-216ENST00000471309 ZSCAN16Q9H4T2 348 aaPredicted RBP10.93□□□□□ -0.66
VPS52-216ENST00000471309 KAT14Q9H8E8 782 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 TMOD2Q9NZR1 351 aa10.93□□□□□ -0.66
VPS52-216ENST00000471309 TRAK2O60296 914 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 SHMT1P34896 483 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 CACNB3P54284 484 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 RASSF7Q02833 373 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 SSRP1Q08945 709 aaKnown RBP10.92□□□□□ -0.66
VPS52-216ENST00000471309 DLGAP5Q15398 846 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 SPDYE2Q495Y8 402 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 FKBP1CQ5VVH2 108 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 NBPF11Q86T75 865 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 TRIM22Q8IYM9 498 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 CTCFLQ8NI51 663 aaPredicted RBP10.92□□□□□ -0.66
VPS52-216ENST00000471309 C8orf76Q96K31 380 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 RNF26Q9BY78 433 aaPredicted RBP10.92□□□□□ -0.66
VPS52-216ENST00000471309 TDRD3Q9H7E2 651 aaKnown RBP10.92□□□□□ -0.66
VPS52-216ENST00000471309 LMBRD1Q9NUN5 540 aa10.92□□□□□ -0.66
VPS52-216ENST00000471309 ZBTB12Q9Y330 459 aaPredicted RBP10.92□□□□□ -0.66
VPS52-216ENST00000471309 IGKV6D-41A0A0C4DH26 115 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 FZD9O00144 591 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 DEXIO95424 95 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms