RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 PPP4R2Q9NY27 417 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 LRP2BPQ9P2M1 347 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 PI4KBQ9UBF8 816 aa11.09□□□□□ -0.63
SF3A1-206ENST00000471037 DOCK3Q8IZD9 2030 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 ALPK3Q96L96 1907 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 BAG3O95817 575 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 PPP4CP60510 307 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 G3BP1Q13283 466 aaKnown RBP eCLIP11.08□□□□□ -0.648e-8■■□□□ 11.6
SF3A1-206ENST00000471037 MTMR2Q13614 643 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 SH3RF3Q8TEJ3 882 aaPredicted RBP11.08□□□□□ -0.64
SF3A1-206ENST00000471037 DIS3LQ8TF46 1054 aaKnown RBP11.08□□□□□ -0.64
SF3A1-206ENST00000471037 GDF15Q99988 308 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 NOL10Q9BSC4 688 aaKnown RBP11.08□□□□□ -0.64
SF3A1-206ENST00000471037 DNAJC18Q9H819 358 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 HMX1Q9NP08 348 aaPredicted RBP11.08□□□□□ -0.64
SF3A1-206ENST00000471037 FLT1P17948 1338 aa11.08□□□□□ -0.64
SF3A1-206ENST00000471037 PLXNB2O15031 1838 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 C19orf81C9J6K1 198 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 SOX1O00570 391 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 BMP8BP34820 402 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 MNX1P50219 401 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 IRX3P78415 501 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 TRIM32Q13049 653 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 MAP3K21Q5TCX8 1036 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 NAA16Q6N069 864 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 FOXP4Q8IVH2 680 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 SOCS4Q8WXH5 440 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 TRIB2Q92519 343 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 ZNF512BQ96KM6 892 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 NBPF3Q9H094 633 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 AATFQ9NY61 560 aaKnown RBP eCLIP11.07□□□□□ -0.64
SF3A1-206ENST00000471037 OGDHLQ9ULD0 1010 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 LAMA3Q16787 3333 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 FOCADQ5VW36 1801 aa11.07□□□□□ -0.64
SF3A1-206ENST00000471037 XRCC5P13010 732 aaKnown RBP11.06□□□□□ -0.64
SF3A1-206ENST00000471037 HERVK_113P62684 666 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 JAG1P78504 1218 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 POLA2Q14181 598 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 TNNI3KQ59H18 835 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 ADGRA1Q86SQ6 560 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 GTF3C2Q8WUA4 911 aaPredicted RBP11.06□□□□□ -0.64
SF3A1-206ENST00000471037 TGFBRAP1Q8WUH2 860 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 P2RX7Q99572 595 aaKnown RBP11.06□□□□□ -0.64
SF3A1-206ENST00000471037 TMOD4Q9NZQ9 345 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 STAP2Q9UGK3 403 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 ZBTB21Q9ULJ3 1066 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 FPGT-TNNI3KV9GXZ4 949 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 DDX60LQ5H9U9 1706 aaKnown RBP11.06□□□□□ -0.64
SF3A1-206ENST00000471037 CDK5RAP2Q96SN8 1893 aa11.06□□□□□ -0.64
SF3A1-206ENST00000471037 USP17L10C9JJH3 530 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 CYP2E1P05181 493 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-206ENST00000471037 MAPK4P31152 587 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 MAPK8IP2Q13387 824 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-206ENST00000471037 CCDC158Q5M9N0 1113 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 TTC39AQ5SRH9 613 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 GPR153Q6NV75 609 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 MAPKAPK5Q8IW41 473 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 TRMT44Q8IYL2 757 aaKnown RBP11.05□□□□□ -0.64
SF3A1-206ENST00000471037 C7orf61Q8IZ16 206 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 CRACR2BQ8N4Y2 399 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-206ENST00000471037 GPRC5AQ8NFJ5 357 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 SSH3Q8TE77 659 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 USP6NLQ92738 828 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 NUDT12Q9BQG2 462 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 DBNDD2Q9BQY9 259 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 C11orf49Q9H6J7 331 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 TXNRD2Q9NNW7 524 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 SNRKQ9NRH2 765 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 RBPJLQ9UBG7 517 aa11.05□□□□□ -0.64
SF3A1-206ENST00000471037 GDF11O95390 407 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 HLA-DOAP06340 250 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 PRKAR2AP13861 404 aaKnown RBP11.04□□□□□ -0.64
SF3A1-206ENST00000471037 CYP2B6P20813 491 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 ERVK-9P63128 1117 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 ERVK-24P63145 666 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 SHROOM1Q2M3G4 852 aaPredicted RBP11.04□□□□□ -0.64
SF3A1-206ENST00000471037 CERS3Q8IU89 383 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 LRCH3Q96II8 777 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 CCDC136Q96JN2 1154 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 C12orf42Q96LP6 360 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 TRIM34Q9BYJ4 488 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 PALD1Q9ULE6 856 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 PFASO15067 1338 aa11.04□□□□□ -0.64
SF3A1-206ENST00000471037 PEX10O60683 326 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 COL6A1P12109 1028 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 ZKSCAN1P17029 563 aaPredicted RBP11.03□□□□□ -0.64
SF3A1-206ENST00000471037 ZAP70P43403 619 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 LRIT3Q3SXY7 679 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 MORN1Q5T089 497 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 POTEEQ6S8J3 1075 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 GPR142Q7Z601 462 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 RPAP2Q8IXW5 612 aaPredicted RBP11.03□□□□□ -0.64
SF3A1-206ENST00000471037 PORCNQ9H237 461 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 C1orf115Q9H7X2 142 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 PIH1D3Q9NQM4 214 aaKnown RBP11.03□□□□□ -0.64
SF3A1-206ENST00000471037 EMILIN3Q9NT22 766 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 DBNLQ9UJU6 430 aaKnown RBP11.03□□□□□ -0.64
SF3A1-206ENST00000471037 ZMYND8Q9ULU4 1186 aaPredicted RBP11.03□□□□□ -0.64
SF3A1-206ENST00000471037 PCDHB15Q9Y5E8 787 aa11.03□□□□□ -0.64
SF3A1-206ENST00000471037 HMMRO75330 724 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms