RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 RRP1BQ14684 758 aaKnown RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 KIF4BQ2VIQ3 1234 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 AKNAD1Q5T1N1 836 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 RNF20Q5VTR2 975 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 DLK2Q6UY11 383 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 USP50Q70EL3 339 aaPredicted RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 TTC6Q86TZ1 520 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 TBC1D10CQ8IV04 446 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 IGDCC4Q8TDY8 1250 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 ZC3H15Q8WU90 426 aaKnown RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 NEK1Q96PY6 1258 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 DEFB129Q9H1M3 183 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 DHX36Q9H2U1 1008 aaKnown RBP7.07□□□□□ -1.28
USP39-213ENST00000467885 PI4KBQ9UBF8 816 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 HACL1Q9UJ83 578 aa7.07□□□□□ -1.28
USP39-213ENST00000467885 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP39-213ENST00000467885 MYO1BO43795 1136 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 ORC4O43929 436 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 TBC1D12O60347 775 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 CPA1P15085 419 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 CDK8P49336 464 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 NEK4P51957 841 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 JAG1P78504 1218 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 ANGEL2Q5VTE6 544 aaKnown RBP7.06□□□□□ -1.28
USP39-213ENST00000467885 PRAMEF18Q5VWM3 479 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 TATDN1Q6P1N9 297 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 MFSD6Q6ZSS7 791 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 RUFY3Q7L099 469 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 CYB5R4Q7L1T6 521 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 DHX32Q7L7V1 743 aaKnown RBP7.06□□□□□ -1.28
USP39-213ENST00000467885 SIAH1Q8IUQ4 282 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 MB21D2Q8IYB1 491 aaPredicted RBP7.06□□□□□ -1.28
USP39-213ENST00000467885 STK11IPQ8N1F8 1099 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 FBXL16Q8N461 479 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 STAG1Q8WVM7 1258 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 TTC14Q96N46 770 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP39-213ENST00000467885 TMEM39BQ9GZU3 492 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 PLA2G2EQ9NZK7 142 aa7.06□□□□□ -1.28
USP39-213ENST00000467885 PHF20L1A8MW92 1017 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 PCP11498 1178 aaKnown RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 RASA1P20936 1047 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 RPS6KB1P23443 525 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 MCCP23508 829 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 PSMA5P28066 241 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 LMOD1P29536 600 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 NOVP48745 357 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 ANTXR2P58335 489 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 KRT32Q14532 448 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 SLC4A8Q2Y0W8 1093 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 NBPF12Q5TAG4 269 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 C16orf86Q6ZW13 317 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 USP48Q86UV5 1035 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 PNMA8AQ86V59 439 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 ZNF444Q8N0Y2 327 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 SLC44A5Q8NCS7 719 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 NCOA7Q8NI08 942 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 TMC2Q8TDI7 906 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 ANKS1AQ92625 1134 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 DDRGK1Q96HY6 314 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 JAKMIP1Q96N16 626 aaKnown RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 AGXT2Q9BYV1 514 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 UPF3BQ9BZI7 483 aaKnown RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 EHD4Q9H223 541 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 VEZTQ9HBM0 779 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 GPHNQ9NQX3 736 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 IL17RBQ9NRM6 502 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 HCSTQ9UBK5 93 aa7.05□□□□□ -1.28
USP39-213ENST00000467885 ARPP21Q9UBL0 812 aaPredicted RBP7.05□□□□□ -1.28
USP39-213ENST00000467885 SBF1O95248 1867 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 MYO5AQ9Y4I1 1855 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 IQCA1LA6NCM1 817 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 B4E1Z4 1266 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 ARHGAP33O14559 1287 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 KDM4AO75164 1064 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 USP2O75604 605 aaPredicted RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 PRDM1O75626 825 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 CD2BP2O95400 341 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 HMGB1P09429 215 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 CASTP20810 708 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 SHMT1P34896 483 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 TNNI2P48788 182 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 EVCP57679 992 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 TFAP4Q01664 338 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 RABEP1Q15276 862 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 FAM47AQ5JRC9 791 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 ADGRD1Q6QNK2 874 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 MIGA2Q7L4E1 593 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 CHST3Q7LGC8 479 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 ZSCAN29Q8IWY8 852 aaPredicted RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 IL27Q8NEV9 243 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 SNX21Q969T3 373 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 DCPSQ96C86 337 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 LARP6Q9BRS8 491 aaKnown RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 KRT23Q9C075 422 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 RNF41Q9H4P4 317 aaPredicted RBP7.04□□□□□ -1.28
USP39-213ENST00000467885 DNAJC18Q9H819 358 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 NMRK2Q9NPI5 230 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 PDRG1Q9NUG6 133 aa7.04□□□□□ -1.28
USP39-213ENST00000467885 TCP11L1Q9NUJ3 509 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms