RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 ZBED9Q6R2W3 1325 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 IGSF3O75054 1194 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 HLA-DOAP06340 250 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 DPF3Q92784 378 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 TMOD4Q9NZQ9 345 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 PLXNB2O15031 1838 aa25.71■■□□□ 1.71
COL9A3-207ENST00000467819 BACE1P56817 501 aa25.7■■□□□ 1.7
COL9A3-207ENST00000467819 AACSQ86V21 672 aa25.7■■□□□ 1.7
COL9A3-207ENST00000467819 METTL16Q86W50 562 aaKnown RBP25.7■■□□□ 1.7
COL9A3-207ENST00000467819 MAGEB6Q8N7X4 407 aa25.7■■□□□ 1.7
COL9A3-207ENST00000467819 COLQQ9Y215 455 aaPredicted RBP25.7■■□□□ 1.7
COL9A3-207ENST00000467819 IRX3P78415 501 aaPredicted RBP25.69■■□□□ 1.7
COL9A3-207ENST00000467819 UBE2Q1Q7Z7E8 422 aa25.69■■□□□ 1.7
COL9A3-207ENST00000467819 ERC1Q8IUD2 1116 aa25.69■■□□□ 1.7
COL9A3-207ENST00000467819 ANTXR1Q9H6X2 564 aa25.69■■□□□ 1.7
COL9A3-207ENST00000467819 ZBTB21Q9ULJ3 1066 aa25.69■■□□□ 1.7
COL9A3-207ENST00000467819 NAV1Q8NEY1 1877 aa25.68■■□□□ 1.7
COL9A3-207ENST00000467819 FARP2O94887 1054 aaPredicted RBP25.68■■□□□ 1.7
COL9A3-207ENST00000467819 SGPL1O95470 568 aa25.68■■□□□ 1.7
COL9A3-207ENST00000467819 USP5P45974 858 aa25.68■■□□□ 1.7
COL9A3-207ENST00000467819 USP17L10C9JJH3 530 aa25.67■■□□□ 1.7
COL9A3-207ENST00000467819 DEFB118Q96PH6 123 aa25.67■■□□□ 1.7
COL9A3-207ENST00000467819 HTATIP2Q9BUP3 242 aa25.67■■□□□ 1.7
COL9A3-207ENST00000467819 IL1RAPL2Q9NP60 686 aa25.67■■□□□ 1.7
COL9A3-207ENST00000467819 MAP3K12Q12852 859 aa25.66■■□□□ 1.7
COL9A3-207ENST00000467819 GINM1Q9NU53 330 aa25.66■■□□□ 1.7
COL9A3-207ENST00000467819 DDX60LQ5H9U9 1706 aaKnown RBP25.66■■□□□ 1.7
COL9A3-207ENST00000467819 C19orf81C9J6K1 198 aa25.65■■□□□ 1.7
COL9A3-207ENST00000467819 PEX10O60683 326 aa25.65■■□□□ 1.7
COL9A3-207ENST00000467819 TFRCP02786 760 aaKnown RBP25.65■■□□□ 1.7
COL9A3-207ENST00000467819 P2RX7Q99572 595 aaKnown RBP25.65■■□□□ 1.7
COL9A3-207ENST00000467819 MORF4L1Q9UBU8 362 aa25.65■■□□□ 1.7
COL9A3-207ENST00000467819 APBB1O00213 710 aa25.64■■□□□ 1.7
COL9A3-207ENST00000467819 GH2P01242 217 aa25.64■■□□□ 1.7
COL9A3-207ENST00000467819 HOXA7P31268 230 aaPredicted RBP25.64■■□□□ 1.7
COL9A3-207ENST00000467819 FXR1P51114 621 aaKnown RBP eCLIP25.64■■□□□ 1.7
COL9A3-207ENST00000467819 CERS3Q8IU89 383 aa25.64■■□□□ 1.7
COL9A3-207ENST00000467819 RHPN1Q8TCX5 695 aa25.64■■□□□ 1.7
COL9A3-207ENST00000467819 ALPK3Q96L96 1907 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 HERVK_113P62684 666 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 HSP90AB4PQ58FF6 505 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 CHRDL2Q6WN34 429 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 BCL11AQ9H165 835 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 PAK6Q9NQU5 681 aaPredicted RBP25.63■■□□□ 1.69
COL9A3-207ENST00000467819 GJD2Q9UKL4 321 aa25.63■■□□□ 1.69
COL9A3-207ENST00000467819 HMGCRP04035 888 aa25.62■■□□□ 1.69
COL9A3-207ENST00000467819 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.62■■□□□ 1.694e-7■□□□□ 8.1
COL9A3-207ENST00000467819 TXNRD2Q9NNW7 524 aa25.62■■□□□ 1.69
COL9A3-207ENST00000467819 ZYXQ15942 572 aaKnown RBP25.61■■□□□ 1.69
COL9A3-207ENST00000467819 EMILIN3Q9NT22 766 aa25.61■■□□□ 1.69
COL9A3-207ENST00000467819 SERPINB13Q9UIV8 391 aa25.61■■□□□ 1.69
COL9A3-207ENST00000467819 MYH8P13535 1937 aa25.61■■□□□ 1.69
COL9A3-207ENST00000467819 MS4A1P11836 297 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 TRIM32Q13049 653 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 TATDN1Q6P1N9 297 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 USP17L2Q6R6M4 530 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 GPRC5AQ8NFJ5 357 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 FEZ1Q99689 392 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 PAGR1Q9BTK6 254 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 EHD4Q9H223 541 aa25.6■■□□□ 1.69
COL9A3-207ENST00000467819 TTC6Q86TZ1 520 aa25.59■■□□□ 1.69
COL9A3-207ENST00000467819 CLASRPQ8N2M8 674 aaKnown RBP25.59■■□□□ 1.69
COL9A3-207ENST00000467819 RIOK1Q9BRS2 568 aaKnown RBP25.59■■□□□ 1.69
COL9A3-207ENST00000467819 COG6Q9Y2V7 657 aa25.59■■□□□ 1.69
COL9A3-207ENST00000467819 RANBP2P49792 3224 aaKnown RBP25.59■■□□□ 1.69
COL9A3-207ENST00000467819 MAGEB6P1A0A0J9YX57 407 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 CYP2B6P20813 491 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 RAB3GAP1Q15042 981 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 TTF1Q15361 905 aaPredicted RBP25.58■■□□□ 1.69
COL9A3-207ENST00000467819 CERKLQ49MI3 558 aaPredicted RBP25.58■■□□□ 1.69
COL9A3-207ENST00000467819 TMED8Q6PL24 325 aaPredicted RBP25.58■■□□□ 1.69
COL9A3-207ENST00000467819 KIF1BPQ96EK5 621 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 DNAJC2Q99543 621 aaKnown RBP25.58■■□□□ 1.69
COL9A3-207ENST00000467819 CRISPLD2Q9H0B8 497 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 RBPJLQ9UBG7 517 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 NR2E3Q9Y5X4 410 aa25.58■■□□□ 1.69
COL9A3-207ENST00000467819 PDE6AP16499 860 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 PLCD1P51178 756 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 ERVK-9P63128 1117 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 ERVK-24P63145 666 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 SLC9C2Q5TAH2 1124 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 TRIB2Q92519 343 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 DDX19BQ9UMR2 479 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 MYH7P12883 1935 aa25.57■■□□□ 1.68
COL9A3-207ENST00000467819 GOLIM4O00461 696 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 HMMRO75330 724 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 IFIT2P09913 472 aaKnown RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 CAPN2P17655 700 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 ABCB5Q2M3G0 1257 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 Q3C1V9 767 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 CCAR1Q8IX12 1150 aaKnown RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 RPAP2Q8IXW5 612 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 DIS3LQ8TF46 1054 aaKnown RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 PAWRQ96IZ0 340 aaKnown RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 NUDT12Q9BQG2 462 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 HMX1Q9NP08 348 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-207ENST00000467819 RPTORQ8N122 1335 aa25.56■■□□□ 1.68
COL9A3-207ENST00000467819 BAZ2AQ9UIF9 1905 aaKnown RBP25.55■■□□□ 1.68
COL9A3-207ENST00000467819 POLR3DP05423 398 aaPredicted RBP25.55■■□□□ 1.68
COL9A3-207ENST00000467819 MAPK4P31152 587 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms