RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 IFNL1Q8IU54 200 aa14.4□□□□□ -0.1
SHROOM3-202ENST00000466541 BRI3BPQ8WY22 251 aa14.4□□□□□ -0.1
SHROOM3-202ENST00000466541 MS4A4AQ96JQ5 239 aa14.4□□□□□ -0.1
SHROOM3-202ENST00000466541 EHD4Q9H223 541 aa14.4□□□□□ -0.1
SHROOM3-202ENST00000466541 HELLSQ9NRZ9 838 aa14.4□□□□□ -0.1
SHROOM3-202ENST00000466541 PHIPQ8WWQ0 1821 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 IGF2BP3O00425 579 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 CETPP11597 493 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 SHMT1P34896 483 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 INHBEP58166 350 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 ABCB5Q2M3G0 1257 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 VPS53Q5VIR6 699 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 OTUD7BQ6GQQ9 843 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 GADL1Q6ZQY3 521 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 METTL16Q86W50 562 aaKnown RBP14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 IFNL3Q8IZI9 196 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 PTPN18Q99952 460 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 NAPBQ9H115 298 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 EPB41L4AQ9HCS5 686 aaPredicted RBP14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 PPP4R2Q9NY27 417 aa14.39□□□□□ -0.11
SHROOM3-202ENST00000466541 CASP8AP2Q9UKL3 1982 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 USP17L5A8MUK1 530 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 CA12O43570 354 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 HSPA8P11142 646 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 SPP2Q13103 211 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 ZNF589Q86UQ0 364 aaPredicted RBP14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 CABP5Q9NP86 173 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 ARPP21Q9UBL0 812 aaPredicted RBP14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 ZBTB21Q9ULJ3 1066 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 AFG3L2Q9Y4W6 797 aa14.38□□□□□ -0.11
SHROOM3-202ENST00000466541 LAMB1P07942 1786 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 HIP1O00291 1037 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 ASNSP08243 561 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 CDK8P49336 464 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 GABPAQ06546 454 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 TATDN1Q6P1N9 297 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 GIMAP6Q6P9H5 292 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 FAM43AQ8N2R8 423 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 R3HDMLQ9H3Y0 253 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 MKNK2Q9HBH9 465 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 CCDC171Q6TFL3 1326 aa14.37□□□□□ -0.11
SHROOM3-202ENST00000466541 BTBD19C9JJ37 291 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 CXCL11O14625 94 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 PRDM1O75626 825 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 HMGCS2P54868 508 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 DGKZQ13574 1117 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 ZYXQ15942 572 aaKnown RBP14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 ZNF280CQ8ND82 737 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 FEZ1Q99689 392 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 AS3MTQ9HBK9 375 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 SWAP70Q9UH65 585 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 KCNH4Q9UQ05 1017 aa14.36□□□□□ -0.11
SHROOM3-202ENST00000466541 PTPRFP10586 1907 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 TESPA1A2RU30 521 aaPredicted RBP14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 ALDH1A1P00352 501 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 HSPD1P10809 573 aaKnown RBP14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 AKR1B1P15121 316 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 MFAP1P55081 439 aaKnown RBP14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 CTDSPL2Q05D32 466 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 CRHR2Q13324 411 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 MTMR2Q13614 643 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 SEPT2Q15019 361 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 TAF1CQ15572 869 aaPredicted RBP14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 SBK1Q52WX2 424 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 C16orf86Q6ZW13 317 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 SAGE1Q9NXZ1 904 aa14.35□□□□□ -0.11
SHROOM3-202ENST00000466541 A0A0G2JLL6 359 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 PDHXO00330 501 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 FOXP2O15409 715 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 ECM2O94769 699 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 SLC3A2P08195 630 aaKnown RBP14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 HAND2P61296 217 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 ATP2B2Q01814 1243 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 PPARAQ07869 468 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 ERICH6BQ5W0A0 696 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 FASTKD5Q7L8L6 764 aaKnown RBP14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 PRRT2Q7Z6L0 340 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 CLEC10AQ8IUN9 316 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 INCENPQ9NQS7 918 aa14.34□□□□□ -0.11
SHROOM3-202ENST00000466541 RAD21O60216 631 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 FGAP02671 866 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 CHMLP26374 656 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 GUCY1A2P33402 732 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 COL13A1Q5TAT6 717 aaPredicted RBP14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 TICAM2Q86XR7 235 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 ZNF444Q8N0Y2 327 aaPredicted RBP14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 ACER1Q8TDN7 264 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 RUFY2Q8WXA3 655 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 ZFYVE28Q9HCC9 887 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 TOMM22Q9NS69 142 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 TMOD4Q9NZQ9 345 aa14.33□□□□□ -0.12
SHROOM3-202ENST00000466541 USP17L10C9JJH3 530 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 PDE4BQ07343 736 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 MOGSQ13724 837 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 FAM47AQ5JRC9 791 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 RRP12Q5JTH9 1297 aaKnown RBP14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 TREML2Q5T2D2 321 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 IFFO2Q5TF58 517 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 GPAT2Q6NUI2 795 aa14.32□□□□□ -0.12
SHROOM3-202ENST00000466541 TMEM179Q6ZVK1 233 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms