RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 COA7Q96BR5 231 aa23.35■■□□□ 1.33
COL9A3-206ENST00000466532 ASCC2Q9H1I8 757 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-206ENST00000466532 ANTXR1Q9H6X2 564 aa23.35■■□□□ 1.33
COL9A3-206ENST00000466532 IL1RAPL2Q9NP60 686 aa23.35■■□□□ 1.33
COL9A3-206ENST00000466532 DDX60LQ5H9U9 1706 aaKnown RBP23.35■■□□□ 1.33
COL9A3-206ENST00000466532 USP5P45974 858 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 BACE1P56817 501 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 MAP3K12Q12852 859 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 SHROOM1Q2M3G4 852 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-206ENST00000466532 CERS3Q8IU89 383 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 UNC93B1Q9H1C4 597 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 TMOD4Q9NZQ9 345 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 TAOK2Q9UL54 1235 aa23.34■■□□□ 1.33
COL9A3-206ENST00000466532 MYH7P12883 1935 aa23.33■■□□□ 1.33
COL9A3-206ENST00000466532 HABP4Q5JVS0 413 aaKnown RBP23.33■■□□□ 1.33
COL9A3-206ENST00000466532 RHPN1Q8TCX5 695 aa23.33■■□□□ 1.33
COL9A3-206ENST00000466532 GINM1Q9NU53 330 aa23.33■■□□□ 1.33
COL9A3-206ENST00000466532 ZBTB21Q9ULJ3 1066 aa23.33■■□□□ 1.33
COL9A3-206ENST00000466532 INHAP05111 366 aa23.32■■□□□ 1.32
COL9A3-206ENST00000466532 IRX3P78415 501 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-206ENST00000466532 CEP290O15078 2479 aa23.31■■□□□ 1.32
COL9A3-206ENST00000466532 C19orf81C9J6K1 198 aa23.31■■□□□ 1.32
COL9A3-206ENST00000466532 USP17L10C9JJH3 530 aa23.31■■□□□ 1.32
COL9A3-206ENST00000466532 TMED8Q6PL24 325 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-206ENST00000466532 U2AF1L4Q8WU68 220 aaKnown RBP23.31■■□□□ 1.32
COL9A3-206ENST00000466532 APBB1O00213 710 aa23.3■■□□□ 1.32
COL9A3-206ENST00000466532 RPAP2Q8IXW5 612 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-206ENST00000466532 DDX19BQ9UMR2 479 aa23.3■■□□□ 1.32
COL9A3-206ENST00000466532 COG6Q9Y2V7 657 aa23.3■■□□□ 1.32
COL9A3-206ENST00000466532 HOXA7P31268 230 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-206ENST00000466532 TTF1Q15361 905 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-206ENST00000466532 CLASRPQ8N2M8 674 aaKnown RBP23.29■■□□□ 1.32
COL9A3-206ENST00000466532 KIF1BPQ96EK5 621 aa23.29■■□□□ 1.32
COL9A3-206ENST00000466532 MORF4L1Q9UBU8 362 aa23.29■■□□□ 1.32
COL9A3-206ENST00000466532 BAZ2AQ9UIF9 1905 aaKnown RBP23.28■■□□□ 1.32
COL9A3-206ENST00000466532 H0YGN5 161 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 HMMRO75330 724 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 SGPL1O95470 568 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 DPF3Q92784 378 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 P2RX7Q99572 595 aaKnown RBP23.28■■□□□ 1.32
COL9A3-206ENST00000466532 PCDH10Q9P2E7 1040 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 SERPINB13Q9UIV8 391 aa23.28■■□□□ 1.32
COL9A3-206ENST00000466532 GH2P01242 217 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 TATDN1Q6P1N9 297 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 UBE2Q1Q7Z7E8 422 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 TTC6Q86TZ1 520 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 RIOK1Q9BRS2 568 aaKnown RBP23.27■■□□□ 1.32
COL9A3-206ENST00000466532 BCL11AQ9H165 835 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 EHD4Q9H223 541 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 ZBTB40Q9NUA8 1239 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 ALPK3Q96L96 1907 aa23.27■■□□□ 1.32
COL9A3-206ENST00000466532 MAGEB6P1A0A0J9YX57 407 aa23.26■■□□□ 1.31
COL9A3-206ENST00000466532 FARP2O94887 1054 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-206ENST00000466532 IFIT2P09913 472 aaKnown RBP23.26■■□□□ 1.31
COL9A3-206ENST00000466532 HERVK_113P62684 666 aa23.26■■□□□ 1.31
COL9A3-206ENST00000466532 SIRT2Q8IXJ6 389 aa23.26■■□□□ 1.31
COL9A3-206ENST00000466532 DEFB118Q96PH6 123 aa23.26■■□□□ 1.31
COL9A3-206ENST00000466532 HTATIP2Q9BUP3 242 aa23.26■■□□□ 1.31
COL9A3-206ENST00000466532 SLC9C2Q5TAH2 1124 aa23.25■■□□□ 1.31
COL9A3-206ENST00000466532 USP17L2Q6R6M4 530 aa23.25■■□□□ 1.31
COL9A3-206ENST00000466532 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.25■■□□□ 1.31
COL9A3-206ENST00000466532 DNAJC2Q99543 621 aaKnown RBP23.25■■□□□ 1.31
COL9A3-206ENST00000466532 PAK6Q9NQU5 681 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-206ENST00000466532 EMILIN3Q9NT22 766 aa23.25■■□□□ 1.31
COL9A3-206ENST00000466532 GJD2Q9UKL4 321 aa23.25■■□□□ 1.31
COL9A3-206ENST00000466532 COLQQ9Y215 455 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-206ENST00000466532 GOLIM4O00461 696 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 PEX10O60683 326 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 TFRCP02786 760 aaKnown RBP23.24■■□□□ 1.31
COL9A3-206ENST00000466532 PDE6AP16499 860 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 CERKLQ49MI3 558 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-206ENST00000466532 GPRC5AQ8NFJ5 357 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 FEZ1Q99689 392 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 TXNRD2Q9NNW7 524 aa23.24■■□□□ 1.31
COL9A3-206ENST00000466532 RAB11FIP3O75154 756 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 HMGCRP04035 888 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 PLCD1P51178 756 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 RAB3GAP1Q15042 981 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 ZYXQ15942 572 aaKnown RBP23.23■■□□□ 1.31
COL9A3-206ENST00000466532 ABCB5Q2M3G0 1257 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.23■■□□□ 1.31
COL9A3-206ENST00000466532 CHMP4BQ9H444 224 aaKnown RBP23.23■■□□□ 1.31
COL9A3-206ENST00000466532 RCAN3Q9UKA8 241 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 ZNF532Q9HCE3 1301 aa23.23■■□□□ 1.31
COL9A3-206ENST00000466532 POLR3DP05423 398 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-206ENST00000466532 CAPN2P17655 700 aa23.22■■□□□ 1.31
COL9A3-206ENST00000466532 GTF3C2Q8WUA4 911 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-206ENST00000466532 C12orf42Q96LP6 360 aa23.22■■□□□ 1.31
COL9A3-206ENST00000466532 CRNKL1Q9BZJ0 848 aaKnown RBP23.22■■□□□ 1.31
COL9A3-206ENST00000466532 RBPJLQ9UBG7 517 aa23.22■■□□□ 1.31
COL9A3-206ENST00000466532 SHMT1P34896 483 aa23.21■■□□□ 1.31
COL9A3-206ENST00000466532 ERVK-9P63128 1117 aa23.21■■□□□ 1.31
COL9A3-206ENST00000466532 ERVK-24P63145 666 aa23.21■■□□□ 1.31
COL9A3-206ENST00000466532 PAGR1Q9BTK6 254 aa23.21■■□□□ 1.31
COL9A3-206ENST00000466532 CABP5Q9NP86 173 aa23.21■■□□□ 1.31
COL9A3-206ENST00000466532 TCRBV5S4A2TA0A5A2 114 aa23.2■■□□□ 1.3
COL9A3-206ENST00000466532 CYP2B6P20813 491 aa23.2■■□□□ 1.3
COL9A3-206ENST00000466532 TRIM32Q13049 653 aa23.2■■□□□ 1.3
COL9A3-206ENST00000466532 EDC3Q96F86 508 aaKnown RBP23.2■■□□□ 1.3
COL9A3-206ENST00000466532 CRISPLD2Q9H0B8 497 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms