RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 EVX2Q03828 476 aa25.22■■□□□ 1.63
COL6A1-203ENST00000466285 DEFB118Q96PH6 123 aa25.22■■□□□ 1.63
COL6A1-203ENST00000466285 TXNRD2Q9NNW7 524 aa25.22■■□□□ 1.63
COL6A1-203ENST00000466285 IDH1O75874 414 aaKnown RBP25.21■■□□□ 1.63
COL6A1-203ENST00000466285 BAG3O95817 575 aa25.21■■□□□ 1.63
COL6A1-203ENST00000466285 PXYLP1Q8TE99 480 aa25.21■■□□□ 1.63
COL6A1-203ENST00000466285 DIS3LQ8TF46 1054 aaKnown RBP25.21■■□□□ 1.63
COL6A1-203ENST00000466285 DPF3Q92784 378 aa25.21■■□□□ 1.63
COL6A1-203ENST00000466285 WDR18Q9BV38 432 aa25.21■■□□□ 1.63
COL6A1-203ENST00000466285 DHX36Q9H2U1 1008 aaKnown RBP25.21■■□□□ 1.63
COL6A1-203ENST00000466285 PAK6Q9NQU5 681 aaPredicted RBP25.21■■□□□ 1.63
COL6A1-203ENST00000466285 SGPL1O95470 568 aa25.2■■□□□ 1.62
COL6A1-203ENST00000466285 MAGEB6Q8N7X4 407 aa25.2■■□□□ 1.62
COL6A1-203ENST00000466285 NKX2-3Q8TAU0 364 aa25.2■■□□□ 1.62
COL6A1-203ENST00000466285 GJD2Q9UKL4 321 aa25.2■■□□□ 1.62
COL6A1-203ENST00000466285 FRMPD3Q5JV73 1810 aa25.19■■□□□ 1.62
COL6A1-203ENST00000466285 PLCG2P16885 1265 aa25.19■■□□□ 1.62
COL6A1-203ENST00000466285 BACE1P56817 501 aa25.19■■□□□ 1.62
COL6A1-203ENST00000466285 CRACR2BQ8N4Y2 399 aaPredicted RBP25.19■■□□□ 1.62
COL6A1-203ENST00000466285 COA7Q96BR5 231 aa25.19■■□□□ 1.62
COL6A1-203ENST00000466285 ASNSP08243 561 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 GCLCP48506 637 aaPredicted RBP25.18■■□□□ 1.62
COL6A1-203ENST00000466285 AACSQ86V21 672 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 P2RX7Q99572 595 aaKnown RBP25.18■■□□□ 1.62
COL6A1-203ENST00000466285 TBC1D2Q9BYX2 928 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 AS3MTQ9HBK9 375 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 IL1RAPL2Q9NP60 686 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 RBM27Q9P2N5 1060 aaKnown RBP25.18■■□□□ 1.62
COL6A1-203ENST00000466285 MORF4L1Q9UBU8 362 aa25.18■■□□□ 1.62
COL6A1-203ENST00000466285 TRIB2Q92519 343 aa25.17■■□□□ 1.62
COL6A1-203ENST00000466285 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.17■■□□□ 1.62
COL6A1-203ENST00000466285 EMILIN3Q9NT22 766 aa25.17■■□□□ 1.62
COL6A1-203ENST00000466285 LAMA3Q16787 3333 aa25.16■■□□□ 1.62
COL6A1-203ENST00000466285 GH2P01242 217 aa25.16■■□□□ 1.62
COL6A1-203ENST00000466285 HERVK_113P62684 666 aa25.16■■□□□ 1.62
COL6A1-203ENST00000466285 CRISPLD2Q9H0B8 497 aa25.16■■□□□ 1.62
COL6A1-203ENST00000466285 PRO3102Q9H379 93 aa25.16■■□□□ 1.62
COL6A1-203ENST00000466285 ZBED9Q6R2W3 1325 aa25.15■■□□□ 1.62
COL6A1-203ENST00000466285 IRX3P78415 501 aaPredicted RBP25.15■■□□□ 1.62
COL6A1-203ENST00000466285 ZYXQ15942 572 aaKnown RBP25.15■■□□□ 1.62
COL6A1-203ENST00000466285 PORCNQ9H237 461 aa25.15■■□□□ 1.62
COL6A1-203ENST00000466285 HOXA7P31268 230 aaPredicted RBP25.14■■□□□ 1.62
COL6A1-203ENST00000466285 MNX1P50219 401 aaPredicted RBP25.14■■□□□ 1.62
COL6A1-203ENST00000466285 PABPC4Q13310 644 aaKnown RBP eCLIP25.14■■□□□ 1.62
COL6A1-203ENST00000466285 FOXP4Q8IVH2 680 aaPredicted RBP25.14■■□□□ 1.62
COL6A1-203ENST00000466285 RIOK1Q9BRS2 568 aaKnown RBP25.14■■□□□ 1.62
COL6A1-203ENST00000466285 TMOD4Q9NZQ9 345 aa25.14■■□□□ 1.62
COL6A1-203ENST00000466285 RBPJLQ9UBG7 517 aa25.14■■□□□ 1.62
COL6A1-203ENST00000466285 BAZ2AQ9UIF9 1905 aaKnown RBP25.14■■□□□ 1.61
COL6A1-203ENST00000466285 USP17L10C9JJH3 530 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 TFRCP02786 760 aaKnown RBP25.13■■□□□ 1.61
COL6A1-203ENST00000466285 HMGCRP04035 888 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 Q3C1V9 767 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 SLFNL1Q499Z3 407 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 SIRT2Q8IXJ6 389 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 EDC3Q96F86 508 aaKnown RBP25.13■■□□□ 1.61
COL6A1-203ENST00000466285 PAWRQ96IZ0 340 aaKnown RBP25.13■■□□□ 1.61
COL6A1-203ENST00000466285 TRIM34Q9BYJ4 488 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 MYH8P13535 1937 aa25.13■■□□□ 1.61
COL6A1-203ENST00000466285 APBB1O00213 710 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 HLA-DOAP06340 250 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 CYP2B6P20813 491 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 USP5P45974 858 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 PLCD1P51178 756 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 TATDN1Q6P1N9 297 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 ACER1Q8TDN7 264 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 PAGR1Q9BTK6 254 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 HTATIP2Q9BUP3 242 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 MYH7P12883 1935 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 RLFQ13129 1914 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 A0A0G2JMZ2 1700 aa25.12■■□□□ 1.61
COL6A1-203ENST00000466285 CNMDO75829 334 aa25.11■■□□□ 1.61
COL6A1-203ENST00000466285 SHMT1P34896 483 aa25.11■■□□□ 1.61
COL6A1-203ENST00000466285 DIEXFQ68CQ4 756 aaKnown RBP25.11■■□□□ 1.61
COL6A1-203ENST00000466285 RHPN1Q8TCX5 695 aa25.11■■□□□ 1.61
COL6A1-203ENST00000466285 CHGBP05060 677 aa25.1■■□□□ 1.61
COL6A1-203ENST00000466285 GUCY1A2P33402 732 aa25.1■■□□□ 1.61
COL6A1-203ENST00000466285 CCL14Q16627 93 aa25.1■■□□□ 1.61
COL6A1-203ENST00000466285 BCL11AQ9H165 835 aa25.1■■□□□ 1.61
COL6A1-203ENST00000466285 PDE6AP16499 860 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 ERVK-9P63128 1117 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 ERVK-24P63145 666 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 EHD4Q9H223 541 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 SERPINB13Q9UIV8 391 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 PARP14Q460N5 1801 aa25.09■■□□□ 1.61
COL6A1-203ENST00000466285 C19orf81C9J6K1 198 aa25.08■■□□□ 1.61
COL6A1-203ENST00000466285 SMIM22K7EJ46 135 aa25.08■■□□□ 1.61
COL6A1-203ENST00000466285 MAP3K21Q5TCX8 1036 aa25.08■■□□□ 1.61
COL6A1-203ENST00000466285 USP6NLQ92738 828 aa25.08■■□□□ 1.61
COL6A1-203ENST00000466285 TCRBV5S4A2TA0A5A2 114 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 CYP2D6P10635 497 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 PRKAR2AP13861 404 aaKnown RBP25.07■■□□□ 1.6
COL6A1-203ENST00000466285 MAP3K12Q12852 859 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 RAB3GAP1Q15042 981 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 USP17L2Q6R6M4 530 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 GPRC5AQ8NFJ5 357 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 C12orf42Q96LP6 360 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 COG6Q9Y2V7 657 aa25.07■■□□□ 1.6
COL6A1-203ENST00000466285 VCAM1P19320 739 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 GPR142Q7Z601 462 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms