RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 MAP3K11Q16584 847 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.18□□□□□ -0.3
VCP-204ENST00000466100 NCOA7Q8NI08 942 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 KLRG1Q96E93 195 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 NEK1Q96PY6 1258 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 ZNF341Q9BYN7 854 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 KRT23Q9C075 422 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 MKNK2Q9HBH9 465 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 ZNF287Q9HBT7 754 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 ZSWIM6Q9HCJ5 1215 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 FZD1Q9UP38 647 aa13.18□□□□□ -0.3
VCP-204ENST00000466100 WDR19Q8NEZ3 1342 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 KDM4AO75164 1064 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 USP2O75604 605 aaPredicted RBP13.17□□□□□ -0.3
VCP-204ENST00000466100 TOMM70O94826 608 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 CPA1P15085 419 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 CASTP20810 708 aaKnown RBP13.17□□□□□ -0.3
VCP-204ENST00000466100 GUCY1A2P33402 732 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 RRP12Q5JTH9 1297 aaKnown RBP13.17□□□□□ -0.3
VCP-204ENST00000466100 SMC1BQ8NDV3 1235 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 NEDD1Q8NHV4 660 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 ESR2Q92731 530 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 CCDC17Q96LX7 622 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 TRIM34Q9BYJ4 488 aa13.17□□□□□ -0.3
VCP-204ENST00000466100 RANBP6O60518 1105 aaKnown RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 HMGB1P09429 215 aaKnown RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 RPS6KB1P23443 525 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 PSMA5P28066 241 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 INPP5BP32019 993 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 CAP2P40123 477 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 NOVP48745 357 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 TFAP4Q01664 338 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 TRDNQ13061 729 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 CERKLQ49MI3 558 aaPredicted RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 FAM47AQ5JRC9 791 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 NOL9Q5SY16 702 aaKnown RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 RALYLQ86SE5 291 aaKnown RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 WRNIP1Q96S55 665 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 UPF3BQ9BZI7 483 aaKnown RBP13.16□□□□□ -0.3
VCP-204ENST00000466100 IL17RBQ9NRM6 502 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 TOMM22Q9NS69 142 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 ZSWIM5Q9P217 1185 aa13.16□□□□□ -0.3
VCP-204ENST00000466100 TSPY2A6NKD2 308 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 PRC1O43663 620 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 PPP1R12BO60237 982 aaPredicted RBP13.15□□□□□ -0.3
VCP-204ENST00000466100 CTNND1O60716 968 aaKnown RBP13.15□□□□□ -0.3
VCP-204ENST00000466100 GDF11O95390 407 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 MCM5P33992 734 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 NF2P35240 595 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 ABCB5Q2M3G0 1257 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 CST9Q5W186 159 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 BLOC1S2Q6QNY1 142 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.15□□□□□ -0.3
VCP-204ENST00000466100 MOB2Q70IA6 237 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 RUFY3Q7L099 469 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 DHX32Q7L7V1 743 aaKnown RBP13.15□□□□□ -0.3
VCP-204ENST00000466100 ZNF444Q8N0Y2 327 aaPredicted RBP13.15□□□□□ -0.3
VCP-204ENST00000466100 TCEANC2Q96MN5 208 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 TTC14Q96N46 770 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 MTA3Q9BTC8 594 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 TCP11L1Q9NUJ3 509 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 ZBTB21Q9ULJ3 1066 aa13.15□□□□□ -0.3
VCP-204ENST00000466100 LOC285556D6RIA3 1793 aa13.15□□□□□ -0.31
VCP-204ENST00000466100 NMT2O60551 498 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 GH2P01242 217 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 TSPY3P0CV98 308 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 TSPY8P0CW00 308 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 FKBP1BP68106 108 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 FSTL1Q12841 308 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 PRKG1Q13976 671 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 RABEP1Q15276 862 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 SEC23AQ15436 765 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 LDLRAD1Q5T700 205 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 RCSD1Q6JBY9 416 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 TMEM179Q6ZVK1 233 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 CHST3Q7LGC8 479 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 CLEC10AQ8IUN9 316 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 SCYL3Q8IZE3 742 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 FBXL16Q8N461 479 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 IGDCC4Q8TDY8 1250 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 AGXT2Q9BYV1 514 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 GPHNQ9NQX3 736 aaPredicted RBP13.14□□□□□ -0.31
VCP-204ENST00000466100 GINM1Q9NU53 330 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.14□□□□□ -0.31
VCP-204ENST00000466100 ANGEL1Q9UNK9 670 aaKnown RBP13.14□□□□□ -0.31
VCP-204ENST00000466100 CYP46A1Q9Y6A2 500 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 SNCAIPQ9Y6H5 919 aa13.14□□□□□ -0.31
VCP-204ENST00000466100 TNKSO95271 1327 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 SH2B2O14492 632 aaPredicted RBP13.13□□□□□ -0.31
VCP-204ENST00000466100 CELF2O95319 508 aaKnown RBP13.13□□□□□ -0.31
VCP-204ENST00000466100 ASNSP08243 561 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 IREB2P48200 963 aaKnown RBP13.13□□□□□ -0.31
VCP-204ENST00000466100 VGLL4Q14135 290 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 SEPT2Q15019 361 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 SIAH1Q8IUQ4 282 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 ENAHQ8N8S7 591 aaPredicted RBP13.13□□□□□ -0.31
VCP-204ENST00000466100 ANKS1AQ92625 1134 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 ZKSCAN4Q969J2 545 aaPredicted RBP13.13□□□□□ -0.31
VCP-204ENST00000466100 CEP95Q96GE4 821 aa13.13□□□□□ -0.31
VCP-204ENST00000466100 ZSCAN10Q96SZ4 725 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms