RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 APPBP2Q92624 585 aa15.69■□□□□ 0.1
COL28A1-206ENST00000465339 DDRGK1Q96HY6 314 aa15.69■□□□□ 0.1
COL28A1-206ENST00000465339 LNPKQ9C0E8 428 aa15.69■□□□□ 0.1
COL28A1-206ENST00000465339 PUS7LQ9H0K6 701 aaKnown RBP15.69■□□□□ 0.1
COL28A1-206ENST00000465339 TSPYL2Q9H2G4 693 aaPredicted RBP15.69■□□□□ 0.1
COL28A1-206ENST00000465339 DCP1AQ9NPI6 582 aaPredicted RBP15.69■□□□□ 0.1
COL28A1-206ENST00000465339 MCM9Q9NXL9 1143 aa15.69■□□□□ 0.1
COL28A1-206ENST00000465339 TAOK2Q9UL54 1235 aa15.69■□□□□ 0.1
COL28A1-206ENST00000465339 USP17L5A8MUK1 530 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 FKTNO75072 461 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 CHGBP05060 677 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 CRHR2Q13324 411 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 RRP1BQ14684 758 aaKnown RBP15.68■□□□□ 0.1
COL28A1-206ENST00000465339 SLC4A8Q2Y0W8 1093 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 FASTKD5Q7L8L6 764 aaKnown RBP15.68■□□□□ 0.1
COL28A1-206ENST00000465339 ANKRD23Q86SG2 305 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 FAM43AQ8N2R8 423 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 SDR42E1Q8WUS8 393 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 ZNF296Q8WUU4 475 aaPredicted RBP15.68■□□□□ 0.1
COL28A1-206ENST00000465339 DNAJC18Q9H819 358 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 ZFYVE28Q9HCC9 887 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 SLC4A4Q9Y6R1 1079 aa15.68■□□□□ 0.1
COL28A1-206ENST00000465339 BAZ2AQ9UIF9 1905 aaKnown RBP15.68■□□□□ 0.1
COL28A1-206ENST00000465339 DDX60LQ5H9U9 1706 aaKnown RBP15.68■□□□□ 0.1
COL28A1-206ENST00000465339 PTPRFP10586 1907 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 BTBD19C9JJ37 291 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 PRKAB2O43741 272 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 PRKCSHP14314 528 aaPredicted RBP15.67■□□□□ 0.1
COL28A1-206ENST00000465339 PLCD1P51178 756 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 TAF1CQ15572 869 aaPredicted RBP15.67■□□□□ 0.1
COL28A1-206ENST00000465339 TATDN1Q6P1N9 297 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 TICAM2Q86XR7 235 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 AMOTL1Q8IY63 956 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 EVI5LQ96CN4 794 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 STRBPQ96SI9 672 aaKnown RBP15.67■□□□□ 0.1
COL28A1-206ENST00000465339 FSD1Q9BTV5 496 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 R3HDMLQ9H3Y0 253 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 AS3MTQ9HBK9 375 aa15.67■□□□□ 0.1
COL28A1-206ENST00000465339 A0A0G2JLL6 359 aaPredicted RBP15.66■□□□□ 0.1
COL28A1-206ENST00000465339 PRRT2Q7Z6L0 340 aaPredicted RBP15.66■□□□□ 0.1
COL28A1-206ENST00000465339 ZNF280CQ8ND82 737 aa15.66■□□□□ 0.1
COL28A1-206ENST00000465339 OSBP2Q969R2 916 aa15.66■□□□□ 0.1
COL28A1-206ENST00000465339 PDHXO00330 501 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 GNAT2P19087 354 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 GABPAQ06546 454 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 SPP2Q13103 211 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 MOGSQ13724 837 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 CERKLQ49MI3 558 aaPredicted RBP15.65■□□□□ 0.1
COL28A1-206ENST00000465339 GIMAP6Q6P9H5 292 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 WDR18Q9BV38 432 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 OSBPL3Q9H4L5 887 aa15.65■□□□□ 0.1
COL28A1-206ENST00000465339 MYH8P13535 1937 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 TRIM75PA6NK02 468 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 USP17L12C9JPN9 530 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 USP17L21D6R901 530 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 TLR2O60603 784 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 DGKZQ13574 1117 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 ZMYM1Q5SVZ6 1142 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 IFFO2Q5TF58 517 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 C12orf60Q5U649 245 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 GPAT2Q6NUI2 795 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 CTU1Q7Z7A3 348 aaKnown RBP15.64■□□□□ 0.09
COL28A1-206ENST00000465339 CCDC84Q86UT8 332 aaPredicted RBP15.64■□□□□ 0.09
COL28A1-206ENST00000465339 PLEKHM2Q8IWE5 1019 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 CABP5Q9NP86 173 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.64■□□□□ 0.09
COL28A1-206ENST00000465339 SWAP70Q9UH65 585 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 ZBTB21Q9ULJ3 1066 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 SLC45A1Q9Y2W3 748 aa15.64■□□□□ 0.09
COL28A1-206ENST00000465339 GSG1L2A8MUP6 293 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 GPAA1O43292 621 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 GDF11O95390 407 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 SHMT1P34896 483 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 JAG1P78504 1218 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 SP3Q02447 781 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 ABCB5Q2M3G0 1257 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 GADL1Q6ZQY3 521 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 PROCA1Q8NCQ7 364 aaPredicted RBP15.63■□□□□ 0.09
COL28A1-206ENST00000465339 ERO1AQ96HE7 468 aa15.63■□□□□ 0.09
COL28A1-206ENST00000465339 C19orf81C9J6K1 198 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 GH2P01242 217 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 CYP2D6P10635 497 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 PKN2Q16513 984 aaKnown RBP15.62■□□□□ 0.09
COL28A1-206ENST00000465339 SBK1Q52WX2 424 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 SH3D19Q5HYK7 790 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 CTR9Q6PD62 1173 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 SPOCK2Q92563 424 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 MCOLN1Q9GZU1 580 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 ARPP21Q9UBL0 812 aaPredicted RBP15.62■□□□□ 0.09
COL28A1-206ENST00000465339 AGTPBP1Q9UPW5 1226 aa15.62■□□□□ 0.09
COL28A1-206ENST00000465339 TRIM6-TRIM34B2RNG4 842 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 PATL2C9JE40 543 aaKnown RBP15.61■□□□□ 0.09
COL28A1-206ENST00000465339 USP17L10C9JJH3 530 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 M0R2C6 588 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 APPP05067 770 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 HMGCS2P54868 508 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 BACE1P56817 501 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 PABPC4Q13310 644 aaKnown RBP eCLIP15.61■□□□□ 0.09
COL28A1-206ENST00000465339 ARHGEF6Q15052 776 aa15.61■□□□□ 0.09
COL28A1-206ENST00000465339 PARK7Q99497 189 aaKnown RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms