RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 PCDHGC5Q9Y5F6 944 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 ZHX2Q9Y6X8 837 aa3.5□□□□□ -1.85
USP40-211ENST00000464956 USP34Q70CQ2 3546 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 ACACBO00763 2458 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 A0A1W2PQ45 241 aaPredicted RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 A0A1W2PQY0 241 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 TLR3O15455 904 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 ARHGAP6O43182 974 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 NCK2O43639 380 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 DIAPH1O60610 1272 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 GLRX3O76003 335 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 HSP90B1P14625 803 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 KCNA4P22459 653 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 PMLP29590 882 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 EIF4G2P78344 907 aaKnown RBP eCLIP3.49□□□□□ -1.85
USP40-211ENST00000464956 MKRN4PQ13434 485 aaPredicted RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 ANGPT1Q15389 498 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 PTPROQ16827 1216 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 TIGD5Q53EQ6 642 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 ASTLQ6HA08 431 aaPredicted RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 UNQ6494/PRO21346Q6UXR6 183 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 MIGA2Q7L4E1 593 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 ZBTB33Q86T24 672 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 RNF180Q86T96 592 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 ANKRD18AQ8IVF6 992 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 RPUSD2Q8IZ73 545 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 DCLK2Q8N568 766 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 GPRC5AQ8NFJ5 357 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 ADAM32Q8TC27 787 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 NUP133Q8WUM0 1156 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 USP6NLQ92738 828 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 SECISBP2LQ93073 1101 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 EDC3Q96F86 508 aaKnown RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 SLC9A7Q96T83 725 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 CARD11Q9BXL7 1154 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 MFSD1Q9H3U5 465 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 SPINK5Q9NQ38 1064 aaPredicted RBP3.49□□□□□ -1.85
USP40-211ENST00000464956 STARD7Q9NQZ5 370 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 NCDNQ9UBB6 729 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 SERPINA10Q9UK55 444 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 FAM208BQ5VWN6 2430 aa3.49□□□□□ -1.85
USP40-211ENST00000464956 TNKSO95271 1327 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 REV3LO60673 3130 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 TRIM75PA6NK02 468 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 SRRM3A6NNA2 597 aaPredicted RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 SEPT4O43236 478 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 PDGFBP01127 241 aaPredicted RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 CYBAP13498 195 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 PTPRAP18433 802 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 FKBP1AP62942 108 aaKnown RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 ZNF200P98182 395 aaPredicted RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 EVX2Q03828 476 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 C19orf57Q0VDD7 668 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 SMAD4Q13485 552 aaKnown RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 MORN1Q5T089 497 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 ANO1Q5XXA6 986 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 LARP1BQ659C4 914 aaKnown RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 GPR142Q7Z601 462 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 PLEKHH3Q7Z736 793 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 DZIP1LQ8IYY4 767 aaKnown RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 CRACR2BQ8N4Y2 399 aaPredicted RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 CERS5Q8N5B7 392 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 GAS2L2Q8NHY3 880 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 PHOSPHO2Q8TCD6 241 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 DDX1Q92499 740 aaKnown RBP3.48□□□□□ -1.85
USP40-211ENST00000464956 CLDND1Q9NY35 253 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 MORF4L1Q9UBU8 362 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 SRPK3Q9UPE1 567 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 AFG3L2Q9Y4W6 797 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 WDFY4Q6ZS81 3184 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 UBR2Q8IWV8 1755 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 XIRP2A4UGR9 3374 aa3.48□□□□□ -1.85
USP40-211ENST00000464956 PLXNA3P51805 1871 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 LRRC37AA6NMS7 1700 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 C1QTNF9BB2RNN3 333 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 LOC730098B7Z3J9 87 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 MBTPS2O43462 519 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SLC4A2P04920 1241 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 PFKMP08237 780 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 HMOX1P09601 288 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 C1QTNF9P0C862 333 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 RARBP10826 455 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 ACTN1P12814 892 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 ICAM3P32942 547 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CYP2C18P33260 490 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CYP2C19P33261 490 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 IL13P35225 146 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CCT4P50991 539 aaKnown RBP3.47□□□□□ -1.85
USP40-211ENST00000464956 CLCN5P51795 746 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 RIPPLY3P57055 190 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 IRX3P78415 501 aaPredicted RBP3.47□□□□□ -1.85
USP40-211ENST00000464956 CLUL1Q15846 466 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 PTPN21Q16825 1174 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CCDC152Q4G0S7 254 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 FAM47AQ5JRC9 791 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 FAM83AQ86UY5 434 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SCYL3Q8IZE3 742 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CRIPAKQ8N1N5 446 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 PROCA1Q8NCQ7 364 aaPredicted RBP3.47□□□□□ -1.85
USP40-211ENST00000464956 BANK1Q8NDB2 785 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms