RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ARMC5Q96C12 935 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 FAM83CQ9BQN1 747 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 PPP1R1BQ9UD71 204 aaPredicted RBP6.52□□□□□ -1.37
VPS41-210ENST00000462429 RAXQ9Y2V3 346 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 ITGB2P05107 769 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 GIPRP48546 466 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 ARMCX6Q7L4S7 300 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 SLFN12Q8IYM2 578 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 MFSD2AQ8NA29 543 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 GIMAP7Q8NHV1 300 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 ANAPC16Q96DE5 110 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 SHDQ96IW2 340 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 FOXQ1Q9C009 403 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 LGR6Q9HBX8 967 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 TPSG1Q9NRR2 321 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 USP35Q9P2H5 1018 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 STOML1Q9UBI4 398 aa6.51□□□□□ -1.37
VPS41-210ENST00000462429 SLC22A31A6NKX4 558 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 STK10O94804 968 aaKnown RBP6.5□□□□□ -1.37
VPS41-210ENST00000462429 CST3P01034 146 aaPredicted RBP6.5□□□□□ -1.37
VPS41-210ENST00000462429 GTF2F1P35269 517 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS41-210ENST00000462429 NKG7Q16617 165 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 PRAMEF13Q5VWM6 474 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 CDCP2Q5VXM1 449 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 OVOS1Q6IE37 1185 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 PRR23CQ6ZRP0 262 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 NLRC3Q7RTR2 1065 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 UBE3DQ7Z6J8 389 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 LSRQ86X29 649 aaPredicted RBP6.5□□□□□ -1.37
VPS41-210ENST00000462429 UBXN4Q92575 508 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 TM9SF2Q99805 663 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 MRVI1Q9Y6F6 885 aa6.5□□□□□ -1.37
VPS41-210ENST00000462429 UPK3BL1B0FP48 263 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 CHURC1-FNTBB4DL54 471 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 UPK3BL2E5RIL1 263 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 RAG1P15918 1043 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 TNNI3KQ59H18 835 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 ARSHQ5FYA8 562 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 PHACTR4Q8IZ21 702 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 ATG4CQ96DT6 458 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 HIRIP3Q9BW71 556 aaPredicted RBP6.49□□□□□ -1.37
VPS41-210ENST00000462429 ANTXR1Q9H6X2 564 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 C7orf69Q9H7B7 122 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 CNNM2Q9H8M5 875 aa6.49□□□□□ -1.37
VPS41-210ENST00000462429 HMX2A2RU54 273 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 MSTNO14793 375 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 DYNC1LI2O43237 492 aaPredicted RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 DNAJA2O60884 412 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 NME1P15531 152 aaKnown RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 DOC2BQ14184 412 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 SEZ6L2Q6UXD5 910 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 TAB3Q8N5C8 712 aaPredicted RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 CYB5D2Q8WUJ1 264 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 DHX38Q92620 1227 aaKnown RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 PSMG3-AS1Q96PY0 264 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 DPH2Q9BQC3 489 aaPredicted RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 ZNF408Q9H9D4 720 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 C1GALT1Q9NS00 363 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 PRKAG3Q9UGI9 489 aa6.48□□□□□ -1.37
VPS41-210ENST00000462429 R3HCC1Q9Y3T6 440 aaKnown RBP6.48□□□□□ -1.37
VPS41-210ENST00000462429 IGSF3O75054 1194 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 IGHA1P01876 353 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 H2AFB1P0C5Y9 115 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 H2AFB2P0C5Z0 115 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 GUCY2CP25092 1073 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 ETFBP38117 255 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 CCNFP41002 786 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 CDK5R2Q13319 367 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 INTS3Q68E01 1043 aaKnown RBP6.47□□□□□ -1.37
VPS41-210ENST00000462429 GPAT2Q6NUI2 795 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 CKAP2LQ8IYA6 745 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 C19orf47Q8N9M1 422 aaKnown RBP6.47□□□□□ -1.37
VPS41-210ENST00000462429 XAGE3Q8WTP9 111 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 CCDC74BQ96LY2 380 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 MIPEPQ99797 713 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 SPOCK3Q9BQ16 436 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 PRDM10Q9NQV6 1147 aa6.47□□□□□ -1.37
VPS41-210ENST00000462429 TNFRSF10CO14798 259 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 SMAD7O15105 426 aaKnown RBP6.46□□□□□ -1.38
VPS41-210ENST00000462429 GSC2O15499 205 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 PROCP04070 461 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 GBP1P32455 592 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 CHMP4BP1P59074 171 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 SOGA3Q5TF21 947 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 RNF43Q68DV7 783 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 ZNF746Q6NUN9 644 aaPredicted RBP6.46□□□□□ -1.38
VPS41-210ENST00000462429 TOP6BLQ8N6T0 577 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 TBC1D32Q96NH3 1257 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 SLC12A7Q9Y666 1083 aa6.46□□□□□ -1.38
VPS41-210ENST00000462429 RGS13O14921 159 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 FAM87AP0C7U9 286 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 ETV3P41162 512 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 CASP7P55210 303 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 CYP27A1Q02318 531 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 RBL2Q08999 1139 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 PPP2R5EQ16537 467 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 LETMD1Q6P1Q0 360 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 RUFY4Q6ZNE9 571 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 ANKS3Q6ZW76 656 aa6.45□□□□□ -1.38
VPS41-210ENST00000462429 ZAR1Q86SH2 424 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms