RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CSRNP1Q96S65 589 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 GPN3Q9UHW5 284 aaPredicted RBP6.89□□□□□ -1.31
VPS41-209ENST00000457055 ABCC10Q5T3U5 1492 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 PPFIA4O75335 1185 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 EIF3JO75822 258 aaKnown RBP6.88□□□□□ -1.31
VPS41-209ENST00000457055 MAP4K4O95819 1239 aaPredicted RBP6.88□□□□□ -1.31
VPS41-209ENST00000457055 KIF4BQ2VIQ3 1234 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 ZNF662Q6ZS27 426 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 SMYD4Q8IYR2 804 aaPredicted RBP6.88□□□□□ -1.31
VPS41-209ENST00000457055 FAM181AQ8N9Y4 354 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 ALKBH8Q96BT7 664 aaKnown RBP6.88□□□□□ -1.31
VPS41-209ENST00000457055 MISP3Q96FF7 219 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 KRT82Q9NSB4 513 aa6.88□□□□□ -1.31
VPS41-209ENST00000457055 KIAA1522Q9P206 1035 aaPredicted RBP6.88□□□□□ -1.31
VPS41-209ENST00000457055 GOLIM4O00461 696 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 RNGTTO60942 597 aaKnown RBP6.87□□□□□ -1.31
VPS41-209ENST00000457055 ZRANB2O95218 330 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS41-209ENST00000457055 FCGRTP55899 365 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 PPP2R3AQ06190 1150 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 FZD5Q13467 585 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 TTLL4Q14679 1199 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 ZNF792Q3KQV3 632 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 SPRED2Q7Z698 418 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 WFDC3Q8IUB2 231 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 PLD6Q8N2A8 252 aaKnown RBP6.87□□□□□ -1.31
VPS41-209ENST00000457055 NETO1Q8TDF5 533 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 KCNB2Q92953 911 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 DISC1Q9NRI5 854 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 PCDHGC5Q9Y5F6 944 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 RPS6KL1Q9Y6S9 549 aa6.87□□□□□ -1.31
VPS41-209ENST00000457055 DNMBPQ6XZF7 1577 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 DIP2BQ9P265 1576 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 POLA1P09884 1462 aaPredicted RBP6.86□□□□□ -1.31
VPS41-209ENST00000457055 PAPLNO95428 1278 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 APPP05067 770 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 HCLS1P14317 486 aaPredicted RBP6.86□□□□□ -1.31
VPS41-209ENST00000457055 BNIP3Q12983 259 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 GIMAP6Q6P9H5 292 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 POU5F2Q8N7G0 328 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 CXorf38Q8TB03 319 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 EVI5LQ96CN4 794 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 RBCK1Q9BYM8 510 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 TMEM39AQ9NV64 488 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 NLRP2Q9NX02 1062 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 PNMA2Q9UL42 364 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 HDAC5Q9UQL6 1122 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 IVNS1ABPQ9Y6Y0 642 aa6.86□□□□□ -1.31
VPS41-209ENST00000457055 SOGA1O94964 1423 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 EXOC5O00471 708 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 SF3A1Q15459 793 aaKnown RBP6.85□□□□□ -1.31
VPS41-209ENST00000457055 CCDC96Q2M329 555 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 PI16Q6UXB8 463 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 PPP4R2Q9NY27 417 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 CEP170Q5SW79 1584 aa6.85□□□□□ -1.31
VPS41-209ENST00000457055 BIN1O00499 593 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 C8AP07357 584 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 XRCC5P13010 732 aaKnown RBP6.84□□□□□ -1.31
VPS41-209ENST00000457055 HDAC1Q13547 482 aaPredicted RBP6.84□□□□□ -1.31
VPS41-209ENST00000457055 CLEC4GQ6UXB4 293 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 ARHGAP27Q6ZUM4 889 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 PDZD3Q86UT5 571 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 SULF2Q8IWU5 870 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS41-209ENST00000457055 JADE2Q9NQC1 790 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 PCOLCE2Q9UKZ9 415 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 NUB1Q9Y5A7 615 aa6.84□□□□□ -1.31
VPS41-209ENST00000457055 LEFTY1O75610 366 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 CD8BP10966 210 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 JAG1P78504 1218 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 TMC7Q7Z402 723 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 TSPAN18Q96SJ8 248 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 DUSP23Q9BVJ7 150 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 BCO2Q9BYV7 579 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 SSU72Q9NP77 194 aaKnown RBP6.83□□□□□ -1.32
VPS41-209ENST00000457055 AKAP2Q9Y2D5 859 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 NOP58Q9Y2X3 529 aaKnown RBP6.83□□□□□ -1.32
VPS41-209ENST00000457055 U3KQE9 123 aa6.83□□□□□ -1.32
VPS41-209ENST00000457055 ABCC8Q09428 1581 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 PBRM1Q86U86 1689 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 MAGI1Q96QZ7 1491 aaPredicted RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 RRP9O43818 475 aaKnown RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 CEACAM5P06731 702 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 FUT4P22083 530 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 PAX3P23760 479 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 CD96P40200 585 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 ZC3H6P61129 1189 aaKnown RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 PRKCQQ04759 706 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 IFI16Q16666 785 aaKnown RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 MAP1SQ66K74 1059 aaPredicted RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 ARMCX6Q7L4S7 300 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 STK35Q8TDR2 534 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 ISL2Q96A47 359 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 HRASLS5Q96KN8 279 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 MAF1Q9H063 256 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 RC3H2Q9HBD1 1191 aaKnown RBP6.82□□□□□ -1.32
VPS41-209ENST00000457055 KLHL42Q9P2K6 505 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 VAV3Q9UKW4 847 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 SH3BP1Q9Y3L3 701 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 COMMD10Q9Y6G5 202 aa6.82□□□□□ -1.32
VPS41-209ENST00000457055 SPATA31D1Q6ZQQ2 1576 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms