RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 MAP3K11Q16584 847 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 WIPI1Q5MNZ9 446 aaPredicted RBP6.67□□□□□ -1.34
USP40-209ENST00000452724 WFDC3Q8IUB2 231 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 HID1Q8IV36 788 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 GAL3ST3Q96A11 431 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 TPX2Q9ULW0 747 aaKnown RBP6.67□□□□□ -1.34
USP40-209ENST00000452724 U3KQE9 123 aa6.67□□□□□ -1.34
USP40-209ENST00000452724 ZNF76P36508 570 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 CAP2P40123 477 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 SLC23A3Q6PIS1 610 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 FAM214BQ7L5A3 538 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 UBE3DQ7Z6J8 389 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 KRTAP1-3Q8IUG1 177 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 MIR1-1HGQ9H1L0 117 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 METTL5Q9NRN9 209 aaKnown RBP6.66□□□□□ -1.34
USP40-209ENST00000452724 TACC3Q9Y6A5 838 aa6.66□□□□□ -1.34
USP40-209ENST00000452724 FAM155AB1AL88 458 aaPredicted RBP6.65□□□□□ -1.34
USP40-209ENST00000452724 EOMESO95936 686 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 RNASE1P07998 156 aaKnown RBP6.65□□□□□ -1.34
USP40-209ENST00000452724 CYP7A1P22680 504 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 CD96P40200 585 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 LIG3P49916 1009 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 FANCCQ00597 558 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 PTPN11Q06124 597 aaPredicted RBP6.65□□□□□ -1.34
USP40-209ENST00000452724 SFRP5Q5T4F7 317 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 HS2ST1Q7LGA3 356 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 SPACA3Q8IXA5 215 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 MIPEPQ99797 713 aa6.65□□□□□ -1.34
USP40-209ENST00000452724 PAPLNO95428 1278 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 PDE4BQ07343 736 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 OGFOD2Q6N063 350 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.64□□□□□ -1.35
USP40-209ENST00000452724 AGMOQ6ZNB7 445 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 ERMP1Q7Z2K6 904 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 KRTAP19-1Q8IUB9 90 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 COX4I2Q96KJ9 171 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 FBRSQ9HAH7 460 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 MBNL3Q9NUK0 354 aaKnown RBP6.64□□□□□ -1.35
USP40-209ENST00000452724 GGT7Q9UJ14 662 aa6.64□□□□□ -1.35
USP40-209ENST00000452724 BTBD11A6QL63 1104 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 F6X3S4 739 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 SLITRK5O94991 958 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 GRK4P32298 578 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 ZP2Q05996 745 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 PWP1Q13610 501 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 SEPT6Q14141 434 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 SLBPQ14493 270 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP40-209ENST00000452724 NKPD1Q17RQ9 610 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 LETMD1Q6P1Q0 360 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 C22orf34Q6ZV56 151 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 RELL1Q8IUW5 271 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 MFSD4AQ8N468 514 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 POU5F2Q8N7G0 328 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 PHC3Q8NDX5 983 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 RNF34Q969K3 372 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 RSRP1Q9BUV0 290 aa6.63□□□□□ -1.35
USP40-209ENST00000452724 PITPNM2Q9BZ72 1349 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 CST3P01034 146 aaPredicted RBP6.62□□□□□ -1.35
USP40-209ENST00000452724 HDLBPQ00341 1268 aaKnown RBP6.62□□□□□ -1.35
USP40-209ENST00000452724 LRRN4CLQ8ND94 238 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 FAM168AQ92567 244 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 TMEM74Q96NL1 305 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 COPRSQ9NQ92 184 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 KBTBD4Q9NVX7 518 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 LMCD1Q9NZU5 365 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 ADAMTS6Q9UKP5 1117 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 TLR6Q9Y2C9 796 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 PCDHB5Q9Y5E4 795 aa6.62□□□□□ -1.35
USP40-209ENST00000452724 PGRP06401 933 aa6.61□□□□□ -1.35
USP40-209ENST00000452724 ZNF865P0CJ78 1059 aaPredicted RBP6.61□□□□□ -1.35
USP40-209ENST00000452724 TCF3P15923 654 aa6.61□□□□□ -1.35
USP40-209ENST00000452724 TFE3P19532 575 aaPredicted RBP6.61□□□□□ -1.35
USP40-209ENST00000452724 GBP2P32456 591 aaPredicted RBP6.61□□□□□ -1.35
USP40-209ENST00000452724 NKG7Q16617 165 aa6.61□□□□□ -1.35
USP40-209ENST00000452724 PRAMEF13Q5VWM6 474 aa6.61□□□□□ -1.35
USP40-209ENST00000452724 NPM2Q86SE8 214 aaKnown RBP6.61□□□□□ -1.35
USP40-209ENST00000452724 GFRA2O00451 464 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 KIR3DL1P43629 444 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 RPL6Q02878 288 aaKnown RBP6.6□□□□□ -1.35
USP40-209ENST00000452724 C9orf131Q5VYM1 1079 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 SLC6A19Q695T7 634 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 METTL16Q86W50 562 aaKnown RBP6.6□□□□□ -1.35
USP40-209ENST00000452724 FLAD1Q8NFF5 587 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 XAGE3Q8WTP9 111 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 TMEM40Q8WWA1 233 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 CCDC120Q96HB5 630 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 RHOVQ96L33 236 aa6.6□□□□□ -1.35
USP40-209ENST00000452724 MINDY4BA8MYZ0 360 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 BPNT1O95861 308 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 CBX7O95931 251 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 ETV3P41162 512 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 CDK8P49336 464 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 LMNB2Q03252 620 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 CAMK2GQ13555 558 aaPredicted RBP6.59□□□□□ -1.35
USP40-209ENST00000452724 CDKAL1Q5VV42 579 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 THAP5Q7Z6K1 395 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 CCDC84Q86UT8 332 aaPredicted RBP6.59□□□□□ -1.35
USP40-209ENST00000452724 USP48Q86UV5 1035 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 NT5DC4Q86YG4 428 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 MRPL41Q8IXM3 137 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms