RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 CABP5Q9NP86 173 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 ZBTB21Q9ULJ3 1066 aa18.71■□□□□ 0.59
LIMS1-210ENST00000449684 PHIPQ8WWQ0 1821 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 ERC2O15083 957 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 MBD4O95243 580 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 GH2P01242 217 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 PRMT2P55345 433 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 MTMR2Q13614 643 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 UBE3CQ15386 1083 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 TREML2Q5T2D2 321 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 PTCH2Q9Y6C5 1203 aa18.7■□□□□ 0.58
LIMS1-210ENST00000449684 C19orf81C9J6K1 198 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 USP17L10C9JJH3 530 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 PLCD1P51178 756 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 FCGRTP55899 365 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 BACE1P56817 501 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 CAP1Q01518 475 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 RAB3GAP1Q15042 981 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 ABCB5Q2M3G0 1257 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 LRRFIP1Q32MZ4 808 aaKnown RBP18.69■□□□□ 0.58
LIMS1-210ENST00000449684 SLFNL1Q499Z3 407 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 TSHZ3Q63HK5 1081 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 TATDN1Q6P1N9 297 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 FEZ1Q99689 392 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 DCP1AQ9NPI6 582 aaPredicted RBP18.69■□□□□ 0.58
LIMS1-210ENST00000449684 SIPA1L1O43166 1804 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 ADGRA2Q96PE1 1338 aa18.69■□□□□ 0.58
LIMS1-210ENST00000449684 BCRP11274 1271 aa18.68■□□□□ 0.58
LIMS1-210ENST00000449684 IRX3P78415 501 aaPredicted RBP18.68■□□□□ 0.58
LIMS1-210ENST00000449684 SH3D19Q5HYK7 790 aa18.68■□□□□ 0.58
LIMS1-210ENST00000449684 RAET1EQ8TD07 263 aa18.68■□□□□ 0.58
LIMS1-210ENST00000449684 ATP8A2Q9NTI2 1148 aa18.68■□□□□ 0.58
LIMS1-210ENST00000449684 PTPRFP10586 1907 aa18.68■□□□□ 0.58
LIMS1-210ENST00000449684 MPHOSPH10O00566 681 aaKnown RBP18.67■□□□□ 0.58
LIMS1-210ENST00000449684 PRKAB2O43741 272 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 JAG1P78504 1218 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 SHROOM1Q2M3G4 852 aaPredicted RBP18.67■□□□□ 0.58
LIMS1-210ENST00000449684 ANKRD45Q5TZF3 282 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 ANKRD13CQ8N6S4 541 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 KBTBD3Q8NAB2 608 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 TRIM47Q96LD4 638 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 TMEM106CQ9BVX2 250 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 SRRDQ9UH36 339 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 SLC4A4Q9Y6R1 1079 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 TTC41PQ6P2S7 1318 aa18.67■□□□□ 0.58
LIMS1-210ENST00000449684 GCLCP48506 637 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-210ENST00000449684 AAMPQ13685 434 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 USP17L2Q6R6M4 530 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 ARMC5Q96C12 935 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 GCC1Q96CN9 775 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 ASCC2Q9H1I8 757 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-210ENST00000449684 NAV1Q8NEY1 1877 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 MYPNQ86TC9 1320 aa18.66■□□□□ 0.58
LIMS1-210ENST00000449684 TNPO2O14787 897 aaKnown RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 GLRX3O76003 335 aaKnown RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 MYCP01106 439 aaPredicted RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 ZFYP08048 801 aaPredicted RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 ZYXQ15942 572 aaKnown RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 PUS7LQ9H0K6 701 aaKnown RBP18.65■□□□□ 0.58
LIMS1-210ENST00000449684 SWAP70Q9UH65 585 aa18.65■□□□□ 0.58
LIMS1-210ENST00000449684 RNF113AO15541 343 aaKnown RBP18.64■□□□□ 0.57
LIMS1-210ENST00000449684 CHGBP05060 677 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 CYP2D6P10635 497 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 CTGFP29279 349 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 SHMT1P34896 483 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 USP14P54578 494 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 SH3TC2Q8TF17 1288 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 BIN2Q9UBW5 565 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-210ENST00000449684 MYH7P12883 1935 aa18.64■□□□□ 0.57
LIMS1-210ENST00000449684 ZSWIM8A7E2V4 1837 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L12C9JPN9 530 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L21D6R901 530 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 MX1P20591 662 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 HDAC1Q13547 482 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-210ENST00000449684 FAM110CQ1W6H9 321 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 APPBP2Q92624 585 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 COA7Q96BR5 231 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 ZNF333Q96JL9 665 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 RWDD1Q9H446 243 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-210ENST00000449684 LOC285556D6RIA3 1793 aa18.63■□□□□ 0.57
LIMS1-210ENST00000449684 HOXA7P31268 230 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-210ENST00000449684 PRKCZQ05513 592 aa18.62■□□□□ 0.57
LIMS1-210ENST00000449684 GABPAQ06546 454 aa18.62■□□□□ 0.57
LIMS1-210ENST00000449684 CCAR1Q8IX12 1150 aaKnown RBP18.62■□□□□ 0.57
LIMS1-210ENST00000449684 OTUD7AQ8TE49 926 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-210ENST00000449684 DYNLL2Q96FJ2 89 aa18.62■□□□□ 0.57
LIMS1-210ENST00000449684 FSD1Q9BTV5 496 aa18.62■□□□□ 0.57
LIMS1-210ENST00000449684 TAOK2Q9UL54 1235 aa18.62■□□□□ 0.57
LIMS1-210ENST00000449684 APPP05067 770 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 GRK4P32298 578 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 SEPT2Q15019 361 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 C12orf60Q5U649 245 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 SLC44A5Q8NCS7 719 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 P2RX7Q99572 595 aaKnown RBP18.61■□□□□ 0.57
LIMS1-210ENST00000449684 EMILIN3Q9NT22 766 aa18.61■□□□□ 0.57
LIMS1-210ENST00000449684 CYP2D7A0A087X1C5 515 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 POTEFA5A3E0 1075 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 GNAT2P19087 354 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 HERVK_113P62684 666 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 UBXN2AP68543 259 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms