RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 RELL1Q8IUW5 271 aa5.74□□□□□ -1.49
VPS41-207ENST00000439468 HEXIM2Q96MH2 286 aaKnown RBP5.74□□□□□ -1.49
VPS41-207ENST00000439468 DPH2Q9BQC3 489 aaPredicted RBP5.74□□□□□ -1.49
VPS41-207ENST00000439468 MKNK2Q9HBH9 465 aa5.74□□□□□ -1.49
VPS41-207ENST00000439468 ADGRE2Q9UHX3 823 aa5.74□□□□□ -1.49
VPS41-207ENST00000439468 USP31Q70CQ4 1352 aa5.74□□□□□ -1.49
VPS41-207ENST00000439468 COL17A1Q9UMD9 1497 aaPredicted RBP5.74□□□□□ -1.49
VPS41-207ENST00000439468 FAM155AB1AL88 458 aaPredicted RBP5.73□□□□□ -1.49
VPS41-207ENST00000439468 SCAMP3O14828 347 aaKnown RBP5.73□□□□□ -1.49
VPS41-207ENST00000439468 PRKCQQ04759 706 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 PDE4BQ07343 736 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 SLBPQ14493 270 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS41-207ENST00000439468 PRAMEF13Q5VWM6 474 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 NFXL1Q6ZNB6 911 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 SPRED2Q7Z698 418 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 MFSD2AQ8NA29 543 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 PHC3Q8NDX5 983 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 KRTAP9-9Q9BYP9 154 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 KRTAP9-4Q9BYQ2 154 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 VAV3Q9UKW4 847 aa5.73□□□□□ -1.49
VPS41-207ENST00000439468 MINDY4BA8MYZ0 360 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 SLITRK5O94991 958 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 EOMESO95936 686 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 CD8BP10966 210 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 RPL6Q02878 288 aaKnown RBP5.72□□□□□ -1.49
VPS41-207ENST00000439468 FAM160A1Q05DH4 1040 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 IKZF1Q13422 519 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 SNAP47Q5SQN1 464 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 BNC2Q6ZN30 1099 aaPredicted RBP5.72□□□□□ -1.49
VPS41-207ENST00000439468 PLAGL2Q9UPG8 496 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 MAPK8IP1Q9UQF2 711 aa5.72□□□□□ -1.49
VPS41-207ENST00000439468 IGF2BP3O00425 579 aaKnown RBP eCLIP5.71□□□□□ -1.5
VPS41-207ENST00000439468 GFRA2O00451 464 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 CBX7O95931 251 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 PF4P02776 101 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 ERCC5P28715 1186 aaPredicted RBP5.71□□□□□ -1.5
VPS41-207ENST00000439468 ZNF76P36508 570 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 RAD51AP2Q09MP3 1159 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 CAMK2GQ13555 558 aaPredicted RBP5.71□□□□□ -1.5
VPS41-207ENST00000439468 PWP1Q13610 501 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 ZNF394Q53GI3 561 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 SFRP5Q5T4F7 317 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 ANGEL2Q5VTE6 544 aaKnown RBP5.71□□□□□ -1.5
VPS41-207ENST00000439468 ZNF746Q6NUN9 644 aaPredicted RBP5.71□□□□□ -1.5
VPS41-207ENST00000439468 LETMD1Q6P1Q0 360 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 NT5DC4Q86YG4 428 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 PI4K2BQ8TCG2 481 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 RNF34Q969K3 372 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 COPRSQ9NQ92 184 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 PCDHGB7Q9Y5F8 929 aa5.71□□□□□ -1.5
VPS41-207ENST00000439468 CST3P01034 146 aaPredicted RBP5.7□□□□□ -1.5
VPS41-207ENST00000439468 PLCG1P19174 1290 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 RACK1P63244 317 aaKnown RBP5.7□□□□□ -1.5
VPS41-207ENST00000439468 LMNB2Q03252 620 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 ZNF792Q3KQV3 632 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 CDKAL1Q5VV42 579 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 MFSD4AQ8N468 514 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 ASB11Q8WXH4 323 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 TMEM87BQ96K49 555 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 TMEM74Q96NL1 305 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 TJP2Q9UDY2 1190 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 SNX11Q9Y5W9 270 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 TACC3Q9Y6A5 838 aa5.7□□□□□ -1.5
VPS41-207ENST00000439468 F13A1P00488 732 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 FUT4P22083 530 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 CYP7A1P22680 504 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 CAP2P40123 477 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 FAM214BQ7L5A3 538 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 CDH24Q86UP0 819 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 SPACA3Q8IXA5 215 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 GOLM1Q8NBJ4 401 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 FAM13CQ8NE31 585 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 RIN3Q8TB24 985 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 TNKS2Q9H2K2 1166 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 RC3H2Q9HBD1 1191 aaKnown RBP5.69□□□□□ -1.5
VPS41-207ENST00000439468 GGT7Q9UJ14 662 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 RNF114Q9Y508 228 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 CORINQ9Y5Q5 1042 aa5.69□□□□□ -1.5
VPS41-207ENST00000439468 PRR33A8MZF0 331 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 H3BS24 57 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 GRIN3BO60391 1043 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 TNNI2P48788 182 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 CLCN7P51798 805 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 NKPD1Q17RQ9 610 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 SLC6A19Q695T7 634 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 CCDC84Q86UT8 332 aaPredicted RBP5.68□□□□□ -1.5
VPS41-207ENST00000439468 WFDC3Q8IUB2 231 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 MRPL41Q8IXM3 137 aaKnown RBP5.68□□□□□ -1.5
VPS41-207ENST00000439468 GATAD2BQ8WXI9 593 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 RHOVQ96L33 236 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 ACBD3Q9H3P7 528 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 METTL5Q9NRN9 209 aaKnown RBP5.68□□□□□ -1.5
VPS41-207ENST00000439468 KBTBD4Q9NVX7 518 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 KLHL3Q9UH77 587 aa5.68□□□□□ -1.5
VPS41-207ENST00000439468 BIN1O00499 593 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 TLR3O15455 904 aaKnown RBP5.67□□□□□ -1.5
VPS41-207ENST00000439468 CILPO75339 1184 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 ETV3P41162 512 aa5.67□□□□□ -1.5
VPS41-207ENST00000439468 YARSP54577 528 aaKnown RBP5.67□□□□□ -1.5
VPS41-207ENST00000439468 CHMP4BP1P59074 171 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms