RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 MED23Q9ULK4 1368 aa13.88□□□□□ -0.19
TCOF1-205ENST00000439160 PDE4DQ08499 809 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 ADALQ6DHV7 355 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 REXO1Q8N1G1 1221 aaKnown RBP13.87□□□□□ -0.19
TCOF1-205ENST00000439160 SUPT20HQ8NEM7 779 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 ALS2CR12Q96Q35 445 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 NIM1KQ8IY84 436 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 PAF1Q8N7H5 531 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 CRACR2AQ9BSW2 395 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 CYP2D7A0A087X1C5 515 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 BICDL2A1A5D9 508 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 KLRF2D3W0D1 207 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 DIXDC1Q155Q3 683 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 NSUN7Q8NE18 718 aaKnown RBP13.87□□□□□ -0.19
TCOF1-205ENST00000439160 GPKOWQ92917 476 aaPredicted RBP eCLIP13.87□□□□□ -0.19
TCOF1-205ENST00000439160 GPR101Q96P66 508 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-205ENST00000439160 VPS16Q9H269 839 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 ATP8A2Q9NTI2 1148 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 LRWD1Q9UFC0 647 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 SMCO2A6NFE2 343 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 CYLC1P35663 651 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-205ENST00000439160 CLEC4GQ6UXB4 293 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 KRT25Q7Z3Z0 450 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 CTNND2Q9UQB3 1225 aa13.87□□□□□ -0.19
TCOF1-205ENST00000439160 ERICH4A6NGS2 130 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PFKFB1P16118 471 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 NF2P35240 595 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PRPF4BQ13523 1007 aaKnown RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 HS1BP3Q53T59 392 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 FRMPD2Q68DX3 1309 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 RPS6KA4O75676 772 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 HS2ST1Q7LGA3 356 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 GAS2L3Q86XJ1 694 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 BIN2Q9UBW5 565 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PUF60Q9UHX1 559 aaKnown RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 NFE2L3Q9Y4A8 694 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PAXBP1Q9Y5B6 917 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 DYNC1I1O14576 645 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 CFBP00751 764 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 GRM1Q13255 1194 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 SMIM5Q71RC9 77 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 LZTS2Q9BRK4 669 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 TCHPQ9BT92 498 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 LZTFL1Q9NQ48 299 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 TRAF5O00463 557 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 KARSQ15046 597 aaKnown RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 POSTNQ15063 836 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 SNX29Q8TEQ0 813 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PRIMPOLQ96LW4 560 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 ISCA1Q9BUE6 129 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 PCDHA7Q9UN72 937 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 BCS1LQ9Y276 419 aa13.86□□□□□ -0.19
TCOF1-205ENST00000439160 V9GYY5 206 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-205ENST00000439160 SEMA3EO15041 775 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 KRT13P13646 458 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 PNOCQ13519 176 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 CLIC6Q96NY7 704 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 GBP3Q9H0R5 595 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 ZSWIM5Q9P217 1185 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 SERTAD1Q9UHV2 236 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 BACH1O14867 736 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 CCDC175P0C221 793 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 ERCC3P19447 782 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 TRMT44Q8IYL2 757 aaKnown RBP13.85□□□□□ -0.19
TCOF1-205ENST00000439160 FERMT2Q96AC1 680 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 BLZF1Q9H2G9 400 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 DBNDD1Q9H9R9 158 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 PPEF1O14829 653 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-205ENST00000439160 BBOX1O75936 387 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 FANCCQ00597 558 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 RAD51AP2Q09MP3 1159 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 LEKR1Q6ZMV7 388 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 DYMQ7RTS9 669 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 CCDC42Q96M95 316 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 FTOQ9C0B1 505 aaKnown RBP eCLIP13.85□□□□□ -0.192e-6■□□□□ 9.3
TCOF1-205ENST00000439160 LUC7L2Q9Y383 392 aaKnown RBP13.85□□□□□ -0.19
TCOF1-205ENST00000439160 CLIC4Q9Y696 253 aa13.85□□□□□ -0.19
TCOF1-205ENST00000439160 CETN2P41208 172 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 CNKSR1Q969H4 720 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 PICK1Q9NRD5 415 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 HOMER2Q9NSB8 354 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 BSDC1Q9NW68 430 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 SCG2P13521 617 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 INF2Q27J81 1249 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 C17orf53Q8N3J3 647 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 FNBP4Q8N3X1 1017 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 CCDC66A2RUB6 948 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 TCP10L2B9ZVM9 353 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 CYP2E1P05181 493 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 CCDC65Q8IXS2 484 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 BLIDQ8IZY5 108 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 MLKLQ8NB16 471 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 MPHOSPH6Q99547 160 aaKnown RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 NEFHP12036 1026 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 TAX1BP1Q86VP1 789 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 CELF1Q92879 486 aaKnown RBP13.84□□□□□ -0.19
TCOF1-205ENST00000439160 KIAA1468Q9P260 1216 aa13.84□□□□□ -0.19
TCOF1-205ENST00000439160 NLRP12P59046 1061 aa13.83□□□□□ -0.19
TCOF1-205ENST00000439160 MAPK8IP2Q13387 824 aaPredicted RBP13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms